miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 136354 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 136075 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135146 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 74970 0.73 0.602651
Target:  5'- gGGGCCAGUacagagUCCAGAaGCgggGCCaGUACa -3'
miRNA:   3'- -CCCGGUCA------AGGUCUgUGa--CGGgUAUG- -5'
29077 3' -55 NC_006146.1 + 137562 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 136911 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135889 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 93822 0.74 0.551751
Target:  5'- cGGCCAcgUCCAGGCAUUGCCUg--- -3'
miRNA:   3'- cCCGGUcaAGGUCUGUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 136818 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 43345 0.74 0.551751
Target:  5'- aGGGCCAG---CAGGCGCaGCCCGUGg -3'
miRNA:   3'- -CCCGGUCaagGUCUGUGaCGGGUAUg -5'
29077 3' -55 NC_006146.1 + 135982 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 136447 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135518 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135239 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 40720 0.72 0.674603
Target:  5'- cGGGUcuCAGgUCCGGGCAggcggGCCCGUGCu -3'
miRNA:   3'- -CCCG--GUCaAGGUCUGUga---CGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 115076 0.73 0.623216
Target:  5'- uGGCCGGgugcccacCCAGGCGCUGgCUGUACu -3'
miRNA:   3'- cCCGGUCaa------GGUCUGUGACgGGUAUG- -5'
29077 3' -55 NC_006146.1 + 135184 0.7 0.754506
Target:  5'- gGGGCCGGgggCCGGGugccccugggucCGCUGCCCc--- -3'
miRNA:   3'- -CCCGGUCaa-GGUCU------------GUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 127089 0.71 0.725103
Target:  5'- aGGGCCAGggCggagcggugggaCAGGCAC-GCCCAgaUGCu -3'
miRNA:   3'- -CCCGGUCaaG------------GUCUGUGaCGGGU--AUG- -5'
29077 3' -55 NC_006146.1 + 137283 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 137004 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.