miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 106318 1.11 0.00273
Target:  5'- aGGGCCAGUUCCAGACACUGCCCAUACc -3'
miRNA:   3'- -CCCGGUCAAGGUCUGUGACGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 135889 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 136075 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 144396 0.65 0.949733
Target:  5'- uGGGUguGUggggucCCAGGCAa-GCCCAcACa -3'
miRNA:   3'- -CCCGguCAa-----GGUCUGUgaCGGGUaUG- -5'
29077 3' -55 NC_006146.1 + 115076 0.73 0.623216
Target:  5'- uGGCCGGgugcccacCCAGGCGCUGgCUGUACu -3'
miRNA:   3'- cCCGGUCaa------GGUCUGUGACgGGUAUG- -5'
29077 3' -55 NC_006146.1 + 135704 0.72 0.643807
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGUc- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUAug -5'
29077 3' -55 NC_006146.1 + 40720 0.72 0.674603
Target:  5'- cGGGUcuCAGgUCCGGGCAggcggGCCCGUGCu -3'
miRNA:   3'- -CCCG--GUCaAGGUCUGUga---CGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 94127 0.71 0.705081
Target:  5'- cGGGCCAGgaagCUguAGACguacucggGCUGCUCGUGCc -3'
miRNA:   3'- -CCCGGUCaa--GG--UCUG--------UGACGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 135239 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135796 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135425 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135146 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 43345 0.74 0.551751
Target:  5'- aGGGCCAG---CAGGCGCaGCCCGUGg -3'
miRNA:   3'- -CCCGGUCaagGUCUGUGaCGGGUAUg -5'
29077 3' -55 NC_006146.1 + 135518 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 93822 0.74 0.551751
Target:  5'- cGGCCAcgUCCAGGCAUUGCCUg--- -3'
miRNA:   3'- cCCGGUcaAGGUCUGUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 121397 0.71 0.705081
Target:  5'- cGGGCCucaacgUCCGGGagaguCUGCCCAUGa -3'
miRNA:   3'- -CCCGGuca---AGGUCUgu---GACGGGUAUg -5'
29077 3' -55 NC_006146.1 + 135611 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 135982 0.71 0.705081
Target:  5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3'
miRNA:   3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 74970 0.73 0.602651
Target:  5'- gGGGCCAGUacagagUCCAGAaGCgggGCCaGUACa -3'
miRNA:   3'- -CCCGGUCA------AGGUCUgUGa--CGGgUAUG- -5'
29077 3' -55 NC_006146.1 + 98330 0.72 0.654093
Target:  5'- uGGCaCGGggCCGGGCGCgGCCCGUc- -3'
miRNA:   3'- cCCG-GUCaaGGUCUGUGaCGGGUAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.