Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29077 | 3' | -55 | NC_006146.1 | + | 137721 | 0.65 | 0.949733 |
Target: 5'- aGGCCAGgaCCGagcggcggcgcGGCGgUGCCCAg-- -3' miRNA: 3'- cCCGGUCaaGGU-----------CUGUgACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 99313 | 0.65 | 0.949733 |
Target: 5'- uGGUCAGggCCAGAC-CUGCUg---- -3' miRNA: 3'- cCCGGUCaaGGUCUGuGACGGguaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 144396 | 0.65 | 0.949733 |
Target: 5'- uGGGUguGUggggucCCAGGCAa-GCCCAcACa -3' miRNA: 3'- -CCCGguCAa-----GGUCUGUgaCGGGUaUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 140701 | 0.65 | 0.949733 |
Target: 5'- gGGGCUGGUUCUGGcucCGCUccucaauguGCCCAaggUGCa -3' miRNA: 3'- -CCCGGUCAAGGUCu--GUGA---------CGGGU---AUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 77961 | 0.66 | 0.945408 |
Target: 5'- uGGGCCGGagCCGGugGCcuuggaggUGCCgGUc- -3' miRNA: 3'- -CCCGGUCaaGGUCugUG--------ACGGgUAug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 15807 | 0.66 | 0.931 |
Target: 5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3' miRNA: 3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 12728 | 0.66 | 0.931 |
Target: 5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3' miRNA: 3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 69254 | 0.66 | 0.927859 |
Target: 5'- aGGGCCAGgUCCGGguccuccucgaagauGCAgCUGgCCCAc-- -3' miRNA: 3'- -CCCGGUCaAGGUC---------------UGU-GAC-GGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 33365 | 0.66 | 0.925716 |
Target: 5'- -cGCCGGUggguccgCCGGGcCGCUGCCCc--- -3' miRNA: 3'- ccCGGUCAa------GGUCU-GUGACGGGuaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 45456 | 0.66 | 0.925716 |
Target: 5'- aGGUCAGg--CAGAUugUGCCgGUAUg -3' miRNA: 3'- cCCGGUCaagGUCUGugACGGgUAUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 95878 | 0.66 | 0.925716 |
Target: 5'- uGGCCccGGUUCCAGAUccuguACUGgCCCcgGu -3' miRNA: 3'- cCCGG--UCAAGGUCUG-----UGAC-GGGuaUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 92862 | 0.66 | 0.930483 |
Target: 5'- uGGCaCGGUcugacuuUCCAGugGCUGUgCAUGu -3' miRNA: 3'- cCCG-GUCA-------AGGUCugUGACGgGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 33039 | 0.66 | 0.931 |
Target: 5'- cGGGgCGGggCCcgGGACAC-GCCCAc-- -3' miRNA: 3'- -CCCgGUCaaGG--UCUGUGaCGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 122564 | 0.66 | 0.936044 |
Target: 5'- uGGCCAGa-CUGGACGCcugGCCCAc-- -3' miRNA: 3'- cCCGGUCaaGGUCUGUGa--CGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 35940 | 0.66 | 0.945408 |
Target: 5'- uGGGUguGUgauguuucggauUCCGGGCugacCUGCCguUGCg -3' miRNA: 3'- -CCCGguCA------------AGGUCUGu---GACGGguAUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 110114 | 0.66 | 0.940845 |
Target: 5'- uGGCCAGgcagacgCCGGGCAUUaaGCCCcgcACg -3' miRNA: 3'- cCCGGUCaa-----GGUCUGUGA--CGGGua-UG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 130163 | 0.66 | 0.940845 |
Target: 5'- uGGCCAGccCCAaGCACggGCCCGccUGCc -3' miRNA: 3'- cCCGGUCaaGGUcUGUGa-CGGGU--AUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 12777 | 0.66 | 0.945408 |
Target: 5'- -uGCCGGacCUGGACGCgGCCC-UGCa -3' miRNA: 3'- ccCGGUCaaGGUCUGUGaCGGGuAUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 7716 | 0.66 | 0.945408 |
Target: 5'- aGGGgCAGaagCCaAGcCACUGCCCGg-- -3' miRNA: 3'- -CCCgGUCaa-GG-UCuGUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 13427 | 0.66 | 0.945408 |
Target: 5'- aGGCCcgc-CCGGucaucACGCUGCCCGUGa -3' miRNA: 3'- cCCGGucaaGGUC-----UGUGACGGGUAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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