miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 110114 0.66 0.940845
Target:  5'- uGGCCAGgcagacgCCGGGCAUUaaGCCCcgcACg -3'
miRNA:   3'- cCCGGUCaa-----GGUCUGUGA--CGGGua-UG- -5'
29077 3' -55 NC_006146.1 + 130163 0.66 0.940845
Target:  5'- uGGCCAGccCCAaGCACggGCCCGccUGCc -3'
miRNA:   3'- cCCGGUCaaGGUcUGUGa-CGGGU--AUG- -5'
29077 3' -55 NC_006146.1 + 8993 0.66 0.940845
Target:  5'- uGGaGCCGGUcUCCcacgGGGCGUUGCCCAa-- -3'
miRNA:   3'- -CC-CGGUCA-AGG----UCUGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 7716 0.66 0.945408
Target:  5'- aGGGgCAGaagCCaAGcCACUGCCCGg-- -3'
miRNA:   3'- -CCCgGUCaa-GG-UCuGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 13427 0.66 0.945408
Target:  5'- aGGCCcgc-CCGGucaucACGCUGCCCGUGa -3'
miRNA:   3'- cCCGGucaaGGUC-----UGUGACGGGUAUg -5'
29077 3' -55 NC_006146.1 + 77961 0.66 0.945408
Target:  5'- uGGGCCGGagCCGGugGCcuuggaggUGCCgGUc- -3'
miRNA:   3'- -CCCGGUCaaGGUCugUG--------ACGGgUAug -5'
29077 3' -55 NC_006146.1 + 116059 0.66 0.945408
Target:  5'- cGGCCgccuucaucgAGUUCCAGAUuugGCCCGc-- -3'
miRNA:   3'- cCCGG----------UCAAGGUCUGugaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 12777 0.66 0.945408
Target:  5'- -uGCCGGacCUGGACGCgGCCC-UGCa -3'
miRNA:   3'- ccCGGUCaaGGUCUGUGaCGGGuAUG- -5'
29077 3' -55 NC_006146.1 + 122564 0.66 0.936044
Target:  5'- uGGCCAGa-CUGGACGCcugGCCCAc-- -3'
miRNA:   3'- cCCGGUCaaGGUCUGUGa--CGGGUaug -5'
29077 3' -55 NC_006146.1 + 33039 0.66 0.931
Target:  5'- cGGGgCGGggCCcgGGACAC-GCCCAc-- -3'
miRNA:   3'- -CCCgGUCaaGG--UCUGUGaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 95878 0.66 0.925716
Target:  5'- uGGCCccGGUUCCAGAUccuguACUGgCCCcgGu -3'
miRNA:   3'- cCCGG--UCAAGGUCUG-----UGAC-GGGuaUg -5'
29077 3' -55 NC_006146.1 + 35940 0.66 0.945408
Target:  5'- uGGGUguGUgauguuucggauUCCGGGCugacCUGCCguUGCg -3'
miRNA:   3'- -CCCGguCA------------AGGUCUGu---GACGGguAUG- -5'
29077 3' -55 NC_006146.1 + 92862 0.66 0.930483
Target:  5'- uGGCaCGGUcugacuuUCCAGugGCUGUgCAUGu -3'
miRNA:   3'- cCCG-GUCA-------AGGUCugUGACGgGUAUg -5'
29077 3' -55 NC_006146.1 + 18505 0.67 0.902165
Target:  5'- uGGGCCAGggCCAGGggcaaaacauUACU-CCCAUc- -3'
miRNA:   3'- -CCCGGUCaaGGUCU----------GUGAcGGGUAug -5'
29077 3' -55 NC_006146.1 + 61866 0.67 0.902165
Target:  5'- gGGGCagaGGUUCCacggGGGCGC-GCCCucggGUACc -3'
miRNA:   3'- -CCCGg--UCAAGG----UCUGUGaCGGG----UAUG- -5'
29077 3' -55 NC_006146.1 + 122245 0.67 0.908412
Target:  5'- uGGGCCAGgauUCagaAGGCGCUgggcacccGCCCGg-- -3'
miRNA:   3'- -CCCGGUCa--AGg--UCUGUGA--------CGGGUaug -5'
29077 3' -55 NC_006146.1 + 125177 0.67 0.902165
Target:  5'- uGGGCCAGgucagggUCguGGCcccGCUGCUC-UACu -3'
miRNA:   3'- -CCCGGUCa------AGguCUG---UGACGGGuAUG- -5'
29077 3' -55 NC_006146.1 + 142925 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 146003 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 49723 0.67 0.914421
Target:  5'- cGGGCCAGgagcugguugauUUCUcguuucagGGGCGCgcgGCCCAgGCc -3'
miRNA:   3'- -CCCGGUC------------AAGG--------UCUGUGa--CGGGUaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.