Results 21 - 40 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29077 | 3' | -55 | NC_006146.1 | + | 136540 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 136447 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 136261 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 136168 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 136075 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 135982 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 135332 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 135239 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 137190 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 137004 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 137097 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 137376 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 123259 | 0.71 | 0.705081 |
Target: 5'- uGGGCCGGgccgcggCCAGAgACgGCUCGUGg -3' miRNA: 3'- -CCCGGUCaa-----GGUCUgUGaCGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 12669 | 0.71 | 0.705081 |
Target: 5'- aGGGCCAcuaCCAGACGCUGUgCAc-- -3' miRNA: 3'- -CCCGGUcaaGGUCUGUGACGgGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 136354 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 137283 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 94127 | 0.71 | 0.705081 |
Target: 5'- cGGGCCAGgaagCUguAGACguacucggGCUGCUCGUGCc -3' miRNA: 3'- -CCCGGUCaa--GG--UCUG--------UGACGGGUAUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 121397 | 0.71 | 0.705081 |
Target: 5'- cGGGCCucaacgUCCGGGagaguCUGCCCAUGa -3' miRNA: 3'- -CCCGGuca---AGGUCUgu---GACGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 135146 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 136818 | 0.71 | 0.705081 |
Target: 5'- cGGGCCGcugCCGGGucCGCUGCCCGg-- -3' miRNA: 3'- -CCCGGUcaaGGUCU--GUGACGGGUaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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