miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 24226 0.68 0.867464
Target:  5'- gGGGCCGGggCCGccCACcGCCCGg-- -3'
miRNA:   3'- -CCCGGUCaaGGUcuGUGaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 24375 0.72 0.664361
Target:  5'- aGGGCCAGcUCCAgGGCGCggcGCCUucGCu -3'
miRNA:   3'- -CCCGGUCaAGGU-CUGUGa--CGGGuaUG- -5'
29077 3' -55 NC_006146.1 + 25040 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 27064 0.7 0.773576
Target:  5'- -uGCCAGUUCUAGGgagggggacCACUGCCCccugGUAUa -3'
miRNA:   3'- ccCGGUCAAGGUCU---------GUGACGGG----UAUG- -5'
29077 3' -55 NC_006146.1 + 28118 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 32023 0.68 0.882022
Target:  5'- gGGGCCucGGgaCgAGGCGCUGgCCCAg-- -3'
miRNA:   3'- -CCCGG--UCaaGgUCUGUGAC-GGGUaug -5'
29077 3' -55 NC_006146.1 + 33039 0.66 0.931
Target:  5'- cGGGgCGGggCCcgGGACAC-GCCCAc-- -3'
miRNA:   3'- -CCCgGUCaaGG--UCUGUGaCGGGUaug -5'
29077 3' -55 NC_006146.1 + 33122 0.67 0.908412
Target:  5'- cGGCgGGUucgCCGGGcCGCUGCCCc--- -3'
miRNA:   3'- cCCGgUCAa--GGUCU-GUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 33246 0.67 0.908412
Target:  5'- cGGCgGGUccgCCGGGcCGCUGCCCc--- -3'
miRNA:   3'- cCCGgUCAa--GGUCU-GUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 33365 0.66 0.925716
Target:  5'- -cGCCGGUggguccgCCGGGcCGCUGCCCc--- -3'
miRNA:   3'- ccCGGUCAa------GGUCU-GUGACGGGuaug -5'
29077 3' -55 NC_006146.1 + 35940 0.66 0.945408
Target:  5'- uGGGUguGUgauguuucggauUCCGGGCugacCUGCCguUGCg -3'
miRNA:   3'- -CCCGguCA------------AGGUCUGu---GACGGguAUG- -5'
29077 3' -55 NC_006146.1 + 40720 0.72 0.674603
Target:  5'- cGGGUcuCAGgUCCGGGCAggcggGCCCGUGCu -3'
miRNA:   3'- -CCCG--GUCaAGGUCUGUga---CGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 43345 0.74 0.551751
Target:  5'- aGGGCCAG---CAGGCGCaGCCCGUGg -3'
miRNA:   3'- -CCCGGUCaagGUCUGUGaCGGGUAUg -5'
29077 3' -55 NC_006146.1 + 43519 0.68 0.867464
Target:  5'- cGGGCCAGgcugCCGGcCACcaucaguggggUGUCCGUGg -3'
miRNA:   3'- -CCCGGUCaa--GGUCuGUG-----------ACGGGUAUg -5'
29077 3' -55 NC_006146.1 + 43941 0.73 0.633512
Target:  5'- cGGGCgGGgucuaUCCAGACGC-GCCCGgagaGCg -3'
miRNA:   3'- -CCCGgUCa----AGGUCUGUGaCGGGUa---UG- -5'
29077 3' -55 NC_006146.1 + 44391 0.66 0.945408
Target:  5'- gGGGCguGUggggCCGGGCACggcGCCUu--- -3'
miRNA:   3'- -CCCGguCAa---GGUCUGUGa--CGGGuaug -5'
29077 3' -55 NC_006146.1 + 45456 0.66 0.925716
Target:  5'- aGGUCAGg--CAGAUugUGCCgGUAUg -3'
miRNA:   3'- cCCGGUCaagGUCUGugACGGgUAUG- -5'
29077 3' -55 NC_006146.1 + 47516 0.7 0.781996
Target:  5'- cGGCCAGUUCCAGccagguuGCGggGCCCccgGCc -3'
miRNA:   3'- cCCGGUCAAGGUC-------UGUgaCGGGua-UG- -5'
29077 3' -55 NC_006146.1 + 48340 0.69 0.810111
Target:  5'- uGGGCCAGgcgUCCAGu--CUGgCCAgcggGCc -3'
miRNA:   3'- -CCCGGUCa--AGGUCuguGACgGGUa---UG- -5'
29077 3' -55 NC_006146.1 + 48636 0.7 0.801201
Target:  5'- gGGGCgGGcUCCGGGCgGgUGCCCAg-- -3'
miRNA:   3'- -CCCGgUCaAGGUCUG-UgACGGGUaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.