miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 3819 0.7 0.7641
Target:  5'- uGGGUCAGg-CCAGGCggggcacccccGCUGCCC-UACc -3'
miRNA:   3'- -CCCGGUCaaGGUCUG-----------UGACGGGuAUG- -5'
29077 3' -55 NC_006146.1 + 7306 0.74 0.551751
Target:  5'- aGGCCucaaCUGGGCAUUGCCCAUGCc -3'
miRNA:   3'- cCCGGucaaGGUCUGUGACGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 7716 0.66 0.945408
Target:  5'- aGGGgCAGaagCCaAGcCACUGCCCGg-- -3'
miRNA:   3'- -CCCgGUCaa-GG-UCuGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 8993 0.66 0.940845
Target:  5'- uGGaGCCGGUcUCCcacgGGGCGUUGCCCAa-- -3'
miRNA:   3'- -CC-CGGUCA-AGG----UCUGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 9484 0.66 0.940845
Target:  5'- gGGGCCAcacccgCCuGGCACagGCCUAUGa -3'
miRNA:   3'- -CCCGGUcaa---GGuCUGUGa-CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 11356 0.68 0.852049
Target:  5'- cGGGCCuGgcgCAGGCGCUGCgCGUcagGCa -3'
miRNA:   3'- -CCCGGuCaagGUCUGUGACGgGUA---UG- -5'
29077 3' -55 NC_006146.1 + 12669 0.71 0.705081
Target:  5'- aGGGCCAcuaCCAGACGCUGUgCAc-- -3'
miRNA:   3'- -CCCGGUcaaGGUCUGUGACGgGUaug -5'
29077 3' -55 NC_006146.1 + 12728 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 12777 0.66 0.945408
Target:  5'- -uGCCGGacCUGGACGCgGCCC-UGCa -3'
miRNA:   3'- ccCGGUCaaGGUCUGUGaCGGGuAUG- -5'
29077 3' -55 NC_006146.1 + 13266 0.71 0.734998
Target:  5'- gGGGCUGGUgcccaagacCCAGGCGgUGCCCGc-- -3'
miRNA:   3'- -CCCGGUCAa--------GGUCUGUgACGGGUaug -5'
29077 3' -55 NC_006146.1 + 13427 0.66 0.945408
Target:  5'- aGGCCcgc-CCGGucaucACGCUGCCCGUGa -3'
miRNA:   3'- cCCGGucaaGGUC-----UGUGACGGGUAUg -5'
29077 3' -55 NC_006146.1 + 14753 0.7 0.773576
Target:  5'- -uGCCAGUUCUAGGgagggggacCACUGCCCccugGUAUa -3'
miRNA:   3'- ccCGGUCAAGGUCU---------GUGACGGG----UAUG- -5'
29077 3' -55 NC_006146.1 + 15807 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 17831 0.7 0.773576
Target:  5'- -uGCCAGUUCUAGGgagggggacCACUGCCCccugGUAUa -3'
miRNA:   3'- ccCGGUCAAGGUCU---------GUGACGGG----UAUG- -5'
29077 3' -55 NC_006146.1 + 18505 0.67 0.902165
Target:  5'- uGGGCCAGggCCAGGggcaaaacauUACU-CCCAUc- -3'
miRNA:   3'- -CCCGGUCaaGGUCU----------GUGAcGGGUAug -5'
29077 3' -55 NC_006146.1 + 18885 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 20909 0.7 0.773576
Target:  5'- -uGCCAGUUCUAGGgagggggacCACUGCCCccugGUAUa -3'
miRNA:   3'- ccCGGUCAAGGUCU---------GUGACGGG----UAUG- -5'
29077 3' -55 NC_006146.1 + 21962 0.66 0.931
Target:  5'- gGGGCCAGcaagCgAGAC-CaGCCCAgagGCc -3'
miRNA:   3'- -CCCGGUCaa--GgUCUGuGaCGGGUa--UG- -5'
29077 3' -55 NC_006146.1 + 22760 0.72 0.664361
Target:  5'- cGGGCCcugaCCAG-CACgaaGCCCAUGCg -3'
miRNA:   3'- -CCCGGucaaGGUCuGUGa--CGGGUAUG- -5'
29077 3' -55 NC_006146.1 + 23986 0.7 0.773576
Target:  5'- -uGCCAGUUCUAGGgagggggacCACUGCCCccugGUAUa -3'
miRNA:   3'- ccCGGUCAAGGUCU---------GUGACGGG----UAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.