miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29077 3' -55 NC_006146.1 + 165487 0.66 0.945408
Target:  5'- aGGCCAGgauugUCCAGAaggagGCaCCGUAUu -3'
miRNA:   3'- cCCGGUCa----AGGUCUguga-CG-GGUAUG- -5'
29077 3' -55 NC_006146.1 + 158316 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 157978 0.69 0.827433
Target:  5'- gGGGCCAGggccUCCAGAgGCaccagGCUCAc-- -3'
miRNA:   3'- -CCCGGUCa---AGGUCUgUGa----CGGGUaug -5'
29077 3' -55 NC_006146.1 + 157058 0.71 0.725103
Target:  5'- -cGCCAGUguuUCCAgGACGCUGUCCGc-- -3'
miRNA:   3'- ccCGGUCA---AGGU-CUGUGACGGGUaug -5'
29077 3' -55 NC_006146.1 + 156373 0.69 0.810111
Target:  5'- aGGGCCcggUCCAGGCuCUccaGCcCCAUGCu -3'
miRNA:   3'- -CCCGGucaAGGUCUGuGA---CG-GGUAUG- -5'
29077 3' -55 NC_006146.1 + 155237 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 154900 0.69 0.827433
Target:  5'- gGGGCCAGggccUCCAGAgGCaccagGCUCAc-- -3'
miRNA:   3'- -CCCGGUCa---AGGUCUgUGa----CGGGUaug -5'
29077 3' -55 NC_006146.1 + 152159 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 151822 0.69 0.827433
Target:  5'- gGGGCCAGggccUCCAGAgGCaccagGCUCAc-- -3'
miRNA:   3'- -CCCGGUCa---AGGUCUgUGa----CGGGUaug -5'
29077 3' -55 NC_006146.1 + 149081 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 148744 0.69 0.827433
Target:  5'- gGGGCCAGggccUCCAGAgGCaccagGCUCAc-- -3'
miRNA:   3'- -CCCGGUCa---AGGUCUgUGa----CGGGUaug -5'
29077 3' -55 NC_006146.1 + 146028 0.69 0.835828
Target:  5'- gGGGgCAGcUCCuGGCACUGCgCGUcCa -3'
miRNA:   3'- -CCCgGUCaAGGuCUGUGACGgGUAuG- -5'
29077 3' -55 NC_006146.1 + 146003 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 145667 0.69 0.827433
Target:  5'- gGGGCCAGggccUCCAGAgGCaccagGCUCAc-- -3'
miRNA:   3'- -CCCGGUCa---AGGUCUgUGa----CGGGUaug -5'
29077 3' -55 NC_006146.1 + 144396 0.65 0.949733
Target:  5'- uGGGUguGUggggucCCAGGCAa-GCCCAcACa -3'
miRNA:   3'- -CCCGguCAa-----GGUCUGUgaCGGGUaUG- -5'
29077 3' -55 NC_006146.1 + 142925 0.67 0.908412
Target:  5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3'
miRNA:   3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5'
29077 3' -55 NC_006146.1 + 142589 0.69 0.827433
Target:  5'- gGGGCCAGggccUCCAGAgGCaccagGCUCAc-- -3'
miRNA:   3'- -CCCGGUCa---AGGUCUgUGa----CGGGUaug -5'
29077 3' -55 NC_006146.1 + 140701 0.65 0.949733
Target:  5'- gGGGCUGGUUCUGGcucCGCUccucaauguGCCCAaggUGCa -3'
miRNA:   3'- -CCCGGUCAAGGUCu--GUGA---------CGGGU---AUG- -5'
29077 3' -55 NC_006146.1 + 137912 0.68 0.888967
Target:  5'- aGGGCCgggGGUUCCGGGgGCaGCCgCGa-- -3'
miRNA:   3'- -CCCGG---UCAAGGUCUgUGaCGG-GUaug -5'
29077 3' -55 NC_006146.1 + 137721 0.65 0.949733
Target:  5'- aGGCCAGgaCCGagcggcggcgcGGCGgUGCCCAg-- -3'
miRNA:   3'- cCCGGUCaaGGU-----------CUGUgACGGGUaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.