Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29077 | 3' | -55 | NC_006146.1 | + | 149081 | 0.67 | 0.908412 |
Target: 5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3' miRNA: 3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 33039 | 0.66 | 0.931 |
Target: 5'- cGGGgCGGggCCcgGGACAC-GCCCAc-- -3' miRNA: 3'- -CCCgGUCaaGG--UCUGUGaCGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 92862 | 0.66 | 0.930483 |
Target: 5'- uGGCaCGGUcugacuuUCCAGugGCUGUgCAUGu -3' miRNA: 3'- cCCG-GUCA-------AGGUCugUGACGgGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 95878 | 0.66 | 0.925716 |
Target: 5'- uGGCCccGGUUCCAGAUccuguACUGgCCCcgGu -3' miRNA: 3'- cCCGG--UCAAGGUCUG-----UGAC-GGGuaUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 49723 | 0.67 | 0.914421 |
Target: 5'- cGGGCCAGgagcugguugauUUCUcguuucagGGGCGCgcgGCCCAgGCc -3' miRNA: 3'- -CCCGGUC------------AAGG--------UCUGUGa--CGGGUaUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 95810 | 0.67 | 0.908412 |
Target: 5'- --cCCGGUUCCAGAUccuguACUGgCCCcgGCu -3' miRNA: 3'- cccGGUCAAGGUCUG-----UGAC-GGGuaUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 158316 | 0.67 | 0.908412 |
Target: 5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3' miRNA: 3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 155237 | 0.67 | 0.908412 |
Target: 5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3' miRNA: 3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 152159 | 0.67 | 0.908412 |
Target: 5'- aGGGCCgGGUUCUgggcuuguggGGACACauggGCUCGUGg -3' miRNA: 3'- -CCCGG-UCAAGG----------UCUGUGa---CGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 122564 | 0.66 | 0.936044 |
Target: 5'- uGGCCAGa-CUGGACGCcugGCCCAc-- -3' miRNA: 3'- cCCGGUCaaGGUCUGUGa--CGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 103586 | 0.66 | 0.940845 |
Target: 5'- uGGGCCGGgcUCAG-CGCggacgugGCCCGggaGCu -3' miRNA: 3'- -CCCGGUCaaGGUCuGUGa------CGGGUa--UG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 110114 | 0.66 | 0.940845 |
Target: 5'- uGGCCAGgcagacgCCGGGCAUUaaGCCCcgcACg -3' miRNA: 3'- cCCGGUCaa-----GGUCUGUGA--CGGGua-UG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 35940 | 0.66 | 0.945408 |
Target: 5'- uGGGUguGUgauguuucggauUCCGGGCugacCUGCCguUGCg -3' miRNA: 3'- -CCCGguCA------------AGGUCUGu---GACGGguAUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 12777 | 0.66 | 0.945408 |
Target: 5'- -uGCCGGacCUGGACGCgGCCC-UGCa -3' miRNA: 3'- ccCGGUCaaGGUCUGUGaCGGGuAUG- -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 116059 | 0.66 | 0.945408 |
Target: 5'- cGGCCgccuucaucgAGUUCCAGAUuugGCCCGc-- -3' miRNA: 3'- cCCGG----------UCAAGGUCUGugaCGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 77961 | 0.66 | 0.945408 |
Target: 5'- uGGGCCGGagCCGGugGCcuuggaggUGCCgGUc- -3' miRNA: 3'- -CCCGGUCaaGGUCugUG--------ACGGgUAug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 13427 | 0.66 | 0.945408 |
Target: 5'- aGGCCcgc-CCGGucaucACGCUGCCCGUGa -3' miRNA: 3'- cCCGGucaaGGUC-----UGUGACGGGUAUg -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 7716 | 0.66 | 0.945408 |
Target: 5'- aGGGgCAGaagCCaAGcCACUGCCCGg-- -3' miRNA: 3'- -CCCgGUCaa-GG-UCuGUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 8993 | 0.66 | 0.940845 |
Target: 5'- uGGaGCCGGUcUCCcacgGGGCGUUGCCCAa-- -3' miRNA: 3'- -CC-CGGUCA-AGG----UCUGUGACGGGUaug -5' |
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29077 | 3' | -55 | NC_006146.1 | + | 130163 | 0.66 | 0.940845 |
Target: 5'- uGGCCAGccCCAaGCACggGCCCGccUGCc -3' miRNA: 3'- cCCGGUCaaGGUcUGUGa-CGGGU--AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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