miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2908 3' -48.4 NC_001493.1 + 36449 1.11 0.011768
Target:  5'- gCGAUACGGUCGAGAAGCUGAACAAGGc -3'
miRNA:   3'- -GCUAUGCCAGCUCUUCGACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 4503 0.79 0.654133
Target:  5'- gGAUACGGUCGGGucguaacgguGGCggcGAACAGGGc -3'
miRNA:   3'- gCUAUGCCAGCUCu---------UCGa--CUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 120058 0.79 0.696759
Target:  5'- gGAUACGGUCGGGucgugaacgguGGCggcGAACAGGGc -3'
miRNA:   3'- gCUAUGCCAGCUCu----------UCGa--CUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 104908 0.75 0.867106
Target:  5'- uGGUGCGGagGAGAAGCUGuACuuaauGGa -3'
miRNA:   3'- gCUAUGCCagCUCUUCGACuUGuu---CC- -5'
2908 3' -48.4 NC_001493.1 + 71344 0.73 0.932963
Target:  5'- aCGGUcGCGGUCuGGAcuaucgAGCUGGGCAAGa -3'
miRNA:   3'- -GCUA-UGCCAGcUCU------UCGACUUGUUCc -5'
2908 3' -48.4 NC_001493.1 + 85184 0.7 0.97843
Target:  5'- -aGUugGaGUCGAuGAGCUGAGCGGGu -3'
miRNA:   3'- gcUAugC-CAGCUcUUCGACUUGUUCc -5'
2908 3' -48.4 NC_001493.1 + 30689 0.7 0.980747
Target:  5'- cCGAccGCGGaCGGGgcGUUGAcgGCAAGGg -3'
miRNA:   3'- -GCUa-UGCCaGCUCuuCGACU--UGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 76484 0.69 0.987573
Target:  5'- uCGAUgacAUGGUgGAGAAGCUGcgacuauucaguCAGGGg -3'
miRNA:   3'- -GCUA---UGCCAgCUCUUCGACuu----------GUUCC- -5'
2908 3' -48.4 NC_001493.1 + 26341 0.69 0.989652
Target:  5'- aCGAggcACGGUucucucCGAGAAGa-GAGCGAGGc -3'
miRNA:   3'- -GCUa--UGCCA------GCUCUUCgaCUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 71624 0.69 0.99319
Target:  5'- aCGAUgagACGGUgGAGGAGUaucUGAugaggcucaACAGGGc -3'
miRNA:   3'- -GCUA---UGCCAgCUCUUCG---ACU---------UGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 11222 0.68 0.994126
Target:  5'- uGAgGCGG-CGcauGguGCUGGACAGGGa -3'
miRNA:   3'- gCUaUGCCaGCu--CuuCGACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 126776 0.68 0.994126
Target:  5'- uGAgGCGG-CGcauGguGCUGGACAGGGa -3'
miRNA:   3'- gCUaUGCCaGCu--CuuCGACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 29216 0.68 0.994126
Target:  5'- ---gGCGaUCGAGAAGCUGAAgGugauGGa -3'
miRNA:   3'- gcuaUGCcAGCUCUUCGACUUgUu---CC- -5'
2908 3' -48.4 NC_001493.1 + 77838 0.68 0.99633
Target:  5'- aGAUACcaGGuUCGucuacAGGAGCUGAGCGcugcGGGa -3'
miRNA:   3'- gCUAUG--CC-AGC-----UCUUCGACUUGU----UCC- -5'
2908 3' -48.4 NC_001493.1 + 13414 0.68 0.99633
Target:  5'- ---cGCGGUCGuGggGCccacggUGAGgGAGGc -3'
miRNA:   3'- gcuaUGCCAGCuCuuCG------ACUUgUUCC- -5'
2908 3' -48.4 NC_001493.1 + 79840 0.68 0.99633
Target:  5'- cCGGUGagGGUCGugcccgggaaAGggGUggUGAGCAGGGu -3'
miRNA:   3'- -GCUAUg-CCAGC----------UCuuCG--ACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 128968 0.68 0.99633
Target:  5'- ---cGCGGUCGuGggGCccacggUGAGgGAGGc -3'
miRNA:   3'- gcuaUGCCAGCuCuuCG------ACUUgUUCC- -5'
2908 3' -48.4 NC_001493.1 + 109718 0.67 0.998168
Target:  5'- gCGAacgACGGggGAGAuGCUGGACGAa- -3'
miRNA:   3'- -GCUa--UGCCagCUCUuCGACUUGUUcc -5'
2908 3' -48.4 NC_001493.1 + 102366 0.67 0.998168
Target:  5'- uGAcGCGuuccUCGAGAAG-UGGACAGGGc -3'
miRNA:   3'- gCUaUGCc---AGCUCUUCgACUUGUUCC- -5'
2908 3' -48.4 NC_001493.1 + 88464 0.67 0.998168
Target:  5'- cCGGU-CGGUaCG-GAGGC-GGACGGGGu -3'
miRNA:   3'- -GCUAuGCCA-GCuCUUCGaCUUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.