Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2908 | 3' | -48.4 | NC_001493.1 | + | 3216 | 0.66 | 0.998746 |
Target: 5'- aGAgGCGGaCGAGGAcCcGGACGAGGu -3' miRNA: 3'- gCUaUGCCaGCUCUUcGaCUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 3764 | 0.66 | 0.999452 |
Target: 5'- uCGAgugGGUgGAGAAGgaGGggGCGAGGc -3' miRNA: 3'- -GCUaugCCAgCUCUUCgaCU--UGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 4503 | 0.79 | 0.654133 |
Target: 5'- gGAUACGGUCGGGucguaacgguGGCggcGAACAGGGc -3' miRNA: 3'- gCUAUGCCAGCUCu---------UCGa--CUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 11222 | 0.68 | 0.994126 |
Target: 5'- uGAgGCGG-CGcauGguGCUGGACAGGGa -3' miRNA: 3'- gCUaUGCCaGCu--CuuCGACUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 12156 | 0.66 | 0.999375 |
Target: 5'- cCGAUGC-GUCGAGGgaggcgggaauagauGGUggaccgGGACGAGGu -3' miRNA: 3'- -GCUAUGcCAGCUCU---------------UCGa-----CUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 13414 | 0.68 | 0.99633 |
Target: 5'- ---cGCGGUCGuGggGCccacggUGAGgGAGGc -3' miRNA: 3'- gcuaUGCCAGCuCuuCG------ACUUgUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 26341 | 0.69 | 0.989652 |
Target: 5'- aCGAggcACGGUucucucCGAGAAGa-GAGCGAGGc -3' miRNA: 3'- -GCUa--UGCCA------GCUCUUCgaCUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 29216 | 0.68 | 0.994126 |
Target: 5'- ---gGCGaUCGAGAAGCUGAAgGugauGGa -3' miRNA: 3'- gcuaUGCcAGCUCUUCGACUUgUu---CC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 30689 | 0.7 | 0.980747 |
Target: 5'- cCGAccGCGGaCGGGgcGUUGAcgGCAAGGg -3' miRNA: 3'- -GCUa-UGCCaGCUCuuCGACU--UGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 36140 | 0.67 | 0.99848 |
Target: 5'- uCGGUGCGGaUGuuccggguggaGGggGCUccugugGAGCGAGGg -3' miRNA: 3'- -GCUAUGCCaGC-----------UCuuCGA------CUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 36449 | 1.11 | 0.011768 |
Target: 5'- gCGAUACGGUCGAGAAGCUGAACAAGGc -3' miRNA: 3'- -GCUAUGCCAGCUCUUCGACUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 49662 | 0.66 | 0.999452 |
Target: 5'- cCGG-ACGGUCGGGAA-CUGGAUu-GGc -3' miRNA: 3'- -GCUaUGCCAGCUCUUcGACUUGuuCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 71344 | 0.73 | 0.932963 |
Target: 5'- aCGGUcGCGGUCuGGAcuaucgAGCUGGGCAAGa -3' miRNA: 3'- -GCUA-UGCCAGcUCU------UCGACUUGUUCc -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 71624 | 0.69 | 0.99319 |
Target: 5'- aCGAUgagACGGUgGAGGAGUaucUGAugaggcucaACAGGGc -3' miRNA: 3'- -GCUA---UGCCAgCUCUUCG---ACU---------UGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 76484 | 0.69 | 0.987573 |
Target: 5'- uCGAUgacAUGGUgGAGAAGCUGcgacuauucaguCAGGGg -3' miRNA: 3'- -GCUA---UGCCAgCUCUUCGACuu----------GUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 77838 | 0.68 | 0.99633 |
Target: 5'- aGAUACcaGGuUCGucuacAGGAGCUGAGCGcugcGGGa -3' miRNA: 3'- gCUAUG--CC-AGC-----UCUUCGACUUGU----UCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 79840 | 0.68 | 0.99633 |
Target: 5'- cCGGUGagGGUCGugcccgggaaAGggGUggUGAGCAGGGu -3' miRNA: 3'- -GCUAUg-CCAGC----------UCuuCG--ACUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 85184 | 0.7 | 0.97843 |
Target: 5'- -aGUugGaGUCGAuGAGCUGAGCGGGu -3' miRNA: 3'- gcUAugC-CAGCUcUUCGACUUGUUCc -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 88464 | 0.67 | 0.998168 |
Target: 5'- cCGGU-CGGUaCG-GAGGC-GGACGGGGu -3' miRNA: 3'- -GCUAuGCCA-GCuCUUCGaCUUGUUCC- -5' |
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2908 | 3' | -48.4 | NC_001493.1 | + | 94624 | 0.66 | 0.998746 |
Target: 5'- gGGUGCGGUCGA---GCUGuuCcGGGa -3' miRNA: 3'- gCUAUGCCAGCUcuuCGACuuGuUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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