miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 5' -51.3 NC_006146.1 + 10049 0.67 0.988357
Target:  5'- aGCugGCCAGacGGAaccauGCAgCCAGCCa -3'
miRNA:   3'- -CGugUGGUU--CCUguuc-UGUaGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 10189 0.73 0.824207
Target:  5'- cGCuguguuCACCcAGGACGAGACGgaCCuGCCu -3'
miRNA:   3'- -CGu-----GUGGuUCCUGUUCUGUa-GGuCGG- -5'
29083 5' -51.3 NC_006146.1 + 10294 0.68 0.96995
Target:  5'- gGCAUGCCAggcggccgaccucgGGGGCAAGcacgcacACAUgCAGCUc -3'
miRNA:   3'- -CGUGUGGU--------------UCCUGUUC-------UGUAgGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 10535 0.69 0.953774
Target:  5'- gGCcUGCCAAGGGCGcugAGACG-CCAGUUc -3'
miRNA:   3'- -CGuGUGGUUCCUGU---UCUGUaGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 10710 0.7 0.925053
Target:  5'- aGCACAgacuggCGAGGAUAaucuGGGCAgccagagCCAGCCg -3'
miRNA:   3'- -CGUGUg-----GUUCCUGU----UCUGUa------GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 11547 0.69 0.96811
Target:  5'- aGCuACGCCcccgccaugcugGAGGcggcgcACGAGACG-CCGGCCa -3'
miRNA:   3'- -CG-UGUGG------------UUCC------UGUUCUGUaGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 12072 0.69 0.949603
Target:  5'- cGCuUugCGAGGGCcGGGCc-CCGGCCg -3'
miRNA:   3'- -CGuGugGUUCCUGuUCUGuaGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 12856 0.67 0.989763
Target:  5'- -gGCGCCuGGGGCGAGGCuggguggCUgggcaGGCCg -3'
miRNA:   3'- cgUGUGGuUCCUGUUCUGua-----GG-----UCGG- -5'
29083 5' -51.3 NC_006146.1 + 13097 0.67 0.986805
Target:  5'- -gACcCCAGGGuCGccAGGCGgggUCCGGCCu -3'
miRNA:   3'- cgUGuGGUUCCuGU--UCUGU---AGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 13768 0.74 0.80643
Target:  5'- -gACGCCAuGGGCGAGGCGUgC-GCCu -3'
miRNA:   3'- cgUGUGGUuCCUGUUCUGUAgGuCGG- -5'
29083 5' -51.3 NC_006146.1 + 14039 0.66 0.994926
Target:  5'- aGCAgG-CGGGGGCAGGcGCAagcgCCGGCUg -3'
miRNA:   3'- -CGUgUgGUUCCUGUUC-UGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 14782 0.66 0.9932
Target:  5'- gGCACcuguuggcgGCUGAGGGgAAGGagaggCCGGCCg -3'
miRNA:   3'- -CGUG---------UGGUUCCUgUUCUgua--GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 15021 0.66 0.9932
Target:  5'- uGUuuGCCAGGGA-GGGGCGcCUGGCCa -3'
miRNA:   3'- -CGugUGGUUCCUgUUCUGUaGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 15986 0.67 0.986805
Target:  5'- uGCGCcuGCgAAGGGC-GGACGcggUCAGCCc -3'
miRNA:   3'- -CGUG--UGgUUCCUGuUCUGUa--GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 16175 0.67 0.986805
Target:  5'- -gACcCCAGGGuCGccAGGCGgggUCCGGCCu -3'
miRNA:   3'- cgUGuGGUUCCuGU--UCUGU---AGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 17447 0.67 0.986805
Target:  5'- gGCAgGCgGAGGGCAAcaacACAacaCCGGCCc -3'
miRNA:   3'- -CGUgUGgUUCCUGUUc---UGUa--GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 17906 0.7 0.940529
Target:  5'- --uCACCAAGaagauGACGGagaugugccuGGCGUCCAGCCa -3'
miRNA:   3'- cguGUGGUUC-----CUGUU----------CUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 18641 0.67 0.983229
Target:  5'- aGCACuccaggcaGCCAGGGAUc--GCAUgcCCGGCCu -3'
miRNA:   3'- -CGUG--------UGGUUCCUGuucUGUA--GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 18857 0.7 0.940529
Target:  5'- gGCGCuGCCGGGGugGuGGACGUgcgggggccUCAGCCc -3'
miRNA:   3'- -CGUG-UGGUUCCugU-UCUGUA---------GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 19253 0.67 0.986805
Target:  5'- -gACcCCAGGGuCGccAGGCGgggUCCGGCCu -3'
miRNA:   3'- cgUGuGGUUCCuGU--UCUGU---AGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.