miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 5' -51.3 NC_006146.1 + 585 0.69 0.964868
Target:  5'- -gGgGCCGGGGGCGcGGCccggcgCCAGCCc -3'
miRNA:   3'- cgUgUGGUUCCUGUuCUGua----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 766 0.69 0.949603
Target:  5'- cGCGCgugcaGCCGAGcgugacGACGGGACGccccgCCGGCCc -3'
miRNA:   3'- -CGUG-----UGGUUC------CUGUUCUGUa----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 908 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 1431 0.66 0.992176
Target:  5'- cCugACCGaguGGGGCAcuggaaguaAGACAUaCgGGCCg -3'
miRNA:   3'- cGugUGGU---UCCUGU---------UCUGUA-GgUCGG- -5'
29083 5' -51.3 NC_006146.1 + 1516 0.69 0.964868
Target:  5'- -gGgGCCGGGGGCGcGGCccggcgCCAGCCc -3'
miRNA:   3'- cgUgUGGUUCCUGUuCUGua----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 1697 0.69 0.949603
Target:  5'- cGCGCgugcaGCCGAGcgugacGACGGGACGccccgCCGGCCc -3'
miRNA:   3'- -CGUG-----UGGUUC------CUGUUCUGUa----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 1840 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 2366 0.66 0.994926
Target:  5'- aGUACgaGCC-GGGAC-AGGCGUCCgcgGGCUu -3'
miRNA:   3'- -CGUG--UGGuUCCUGuUCUGUAGG---UCGG- -5'
29083 5' -51.3 NC_006146.1 + 2448 0.69 0.964868
Target:  5'- -gGgGCCGGGGGCGcGGCccggcgCCAGCCc -3'
miRNA:   3'- cgUgUGGUUCCUGUuCUGua----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 2484 0.66 0.991033
Target:  5'- gGC-CGgCGGGGGC-AGGCAgCUGGCCg -3'
miRNA:   3'- -CGuGUgGUUCCUGuUCUGUaGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 2629 0.69 0.949603
Target:  5'- cGCGCgugcaGCCGAGcgugacGACGGGACGccccgCCGGCCc -3'
miRNA:   3'- -CGUG-----UGGUUC------CUGUUCUGUa----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 2648 0.71 0.919392
Target:  5'- aCACGgCGGGGAC----CAUCCAGCCc -3'
miRNA:   3'- cGUGUgGUUCCUGuucuGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 2772 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 3380 0.69 0.964868
Target:  5'- -gGgGCCGGGGGCGcGGCccggcgCCAGCCc -3'
miRNA:   3'- cgUgUGGUUCCUGUuCUGua----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 3561 0.69 0.949603
Target:  5'- cGCGCgugcaGCCGAGcgugacGACGGGACGccccgCCGGCCc -3'
miRNA:   3'- -CGUG-----UGGUUC------CUGUUCUGUa----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 3704 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 4837 0.66 0.994926
Target:  5'- aGCACACCAgcagcauggagGGGAauaGGGGCAggggCgggGGCCa -3'
miRNA:   3'- -CGUGUGGU-----------UCCUg--UUCUGUa---Gg--UCGG- -5'
29083 5' -51.3 NC_006146.1 + 5090 0.66 0.993578
Target:  5'- aCGCgGCCAGGGACGccccccuagCCGGCCg -3'
miRNA:   3'- cGUG-UGGUUCCUGUucugua---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 5628 0.72 0.870636
Target:  5'- --uCACCAGGGACAuggccauggcgggGGACAgggggacgagcaCCAGCCg -3'
miRNA:   3'- cguGUGGUUCCUGU-------------UCUGUa-----------GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 8534 0.74 0.80643
Target:  5'- gGCGCGCCAAGGGgcuccaucucCAAGGCGcucauagcUgCAGCCc -3'
miRNA:   3'- -CGUGUGGUUCCU----------GUUCUGU--------AgGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.