miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 5' -51.3 NC_006146.1 + 111488 1.15 0.004121
Target:  5'- uGCACACCAAGGACAAGACAUCCAGCCu -3'
miRNA:   3'- -CGUGUGGUUCCUGUUCUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 57266 0.84 0.318728
Target:  5'- aGCGCAaCGGGGGCGAGACAacaUCCAGCg -3'
miRNA:   3'- -CGUGUgGUUCCUGUUCUGU---AGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 28262 0.81 0.41743
Target:  5'- aGCACGCCAuGGGCuucgGGGCAUCUugaGGCCa -3'
miRNA:   3'- -CGUGUGGUuCCUGu---UCUGUAGG---UCGG- -5'
29083 5' -51.3 NC_006146.1 + 100456 0.8 0.496649
Target:  5'- uCACAgCCGAGGACGAGgaccggccuuuuuaaACAUCCGGUCa -3'
miRNA:   3'- cGUGU-GGUUCCUGUUC---------------UGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 155591 0.79 0.532636
Target:  5'- gGCACACC-GGGGCu-GGCcUCCGGCCc -3'
miRNA:   3'- -CGUGUGGuUCCUGuuCUGuAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 102536 0.78 0.562287
Target:  5'- aGCAcCGCCAcgGGGAUcuccacaGAGGCGUCCAGCa -3'
miRNA:   3'- -CGU-GUGGU--UCCUG-------UUCUGUAGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 83450 0.77 0.625844
Target:  5'- aGUACugCAGGGACAGGGcCGUgUAGUCg -3'
miRNA:   3'- -CGUGugGUUCCUGUUCU-GUAgGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 117707 0.76 0.698855
Target:  5'- gGCACGCCGccccccaaggccGGGGcCGAGGCcgagccuUCCGGCCa -3'
miRNA:   3'- -CGUGUGGU------------UCCU-GUUCUGu------AGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 99864 0.76 0.709126
Target:  5'- cGCGCGgCGuacGGAUGuAGACGUCCAGCUg -3'
miRNA:   3'- -CGUGUgGUu--CCUGU-UCUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 28070 0.75 0.719328
Target:  5'- aGCACGCCAuGGGCuucGGGGCAUUCuugaGGCCc -3'
miRNA:   3'- -CGUGUGGUuCCUG---UUCUGUAGG----UCGG- -5'
29083 5' -51.3 NC_006146.1 + 64239 0.75 0.729451
Target:  5'- cGUGC-CCGGGGAgAGGACGgcccugaCCAGCCg -3'
miRNA:   3'- -CGUGuGGUUCCUgUUCUGUa------GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 126637 0.75 0.729451
Target:  5'- gGCACACCccggggcccgcAGGGGCAauGGACAccgccgcCCGGCCa -3'
miRNA:   3'- -CGUGUGG-----------UUCCUGU--UCUGUa------GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 1840 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 3704 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 908 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 2772 0.75 0.739486
Target:  5'- cGCGCGCCGccccccGGGACcccGGGCGcgcgCCGGCCu -3'
miRNA:   3'- -CGUGUGGU------UCCUGu--UCUGUa---GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 58227 0.75 0.749423
Target:  5'- cGCACACCGGGGGCGuGGACAag-GGCUa -3'
miRNA:   3'- -CGUGUGGUUCCUGU-UCUGUaggUCGG- -5'
29083 5' -51.3 NC_006146.1 + 71362 0.75 0.759252
Target:  5'- -uGCcCCGGGGGCucGGACuUCCAGCCc -3'
miRNA:   3'- cgUGuGGUUCCUGu-UCUGuAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 30193 0.75 0.759252
Target:  5'- gGCACAUUGAGGAgCAGGAgcCAgaaCCAGCCc -3'
miRNA:   3'- -CGUGUGGUUCCU-GUUCU--GUa--GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 50415 0.74 0.768963
Target:  5'- gGC-CGCCAGGGACGgcAGGCAggccgcaagcuUCgCGGCCa -3'
miRNA:   3'- -CGuGUGGUUCCUGU--UCUGU-----------AG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.