miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29083 5' -51.3 NC_006146.1 + 111488 1.15 0.004121
Target:  5'- uGCACACCAAGGACAAGACAUCCAGCCu -3'
miRNA:   3'- -CGUGUGGUUCCUGUUCUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 128768 0.72 0.857497
Target:  5'- aCACGCuCAGGGACAcGGCGUgCCAgagGCCc -3'
miRNA:   3'- cGUGUG-GUUCCUGUuCUGUA-GGU---CGG- -5'
29083 5' -51.3 NC_006146.1 + 156700 0.72 0.870636
Target:  5'- uGCGCGCCAccgccuccccguccAGG-CuccGGGgGUCCAGCCu -3'
miRNA:   3'- -CGUGUGGU--------------UCCuGu--UCUgUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 133809 0.66 0.995224
Target:  5'- gGCAUGCCAacugcucaggggaggGGGugAGGAUggUgGGCCc -3'
miRNA:   3'- -CGUGUGGU---------------UCCugUUCUGuaGgUCGG- -5'
29083 5' -51.3 NC_006146.1 + 99864 0.76 0.709126
Target:  5'- cGCGCGgCGuacGGAUGuAGACGUCCAGCUg -3'
miRNA:   3'- -CGUGUgGUu--CCUGU-UCUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 64239 0.75 0.729451
Target:  5'- cGUGC-CCGGGGAgAGGACGgcccugaCCAGCCg -3'
miRNA:   3'- -CGUGuGGUUCCUgUUCUGUa------GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 50132 0.74 0.778546
Target:  5'- --cCGCCAGGGACAugAGGCGccgCCAGCg -3'
miRNA:   3'- cguGUGGUUCCUGU--UCUGUa--GGUCGg -5'
29083 5' -51.3 NC_006146.1 + 57988 0.74 0.787991
Target:  5'- gGCGCACC-AGGACGAGcuggaggcccGgGUCuCGGCCu -3'
miRNA:   3'- -CGUGUGGuUCCUGUUC----------UgUAG-GUCGG- -5'
29083 5' -51.3 NC_006146.1 + 56279 0.74 0.80643
Target:  5'- -aGCGagGAGGcCAGGACGUCCAGCg -3'
miRNA:   3'- cgUGUggUUCCuGUUCUGUAGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 146594 0.73 0.849477
Target:  5'- uCGCGCUcuGGGugGAGgggaaacaGCGUCCAGCCc -3'
miRNA:   3'- cGUGUGGu-UCCugUUC--------UGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 49920 0.73 0.832825
Target:  5'- gGC-CGCCGAGGcCAcucggucccGGACGUCC-GCCg -3'
miRNA:   3'- -CGuGUGGUUCCuGU---------UCUGUAGGuCGG- -5'
29083 5' -51.3 NC_006146.1 + 55518 0.74 0.80643
Target:  5'- uGCACGCgAGcGGcCAGGGCcUCCAGCUc -3'
miRNA:   3'- -CGUGUGgUU-CCuGUUCUGuAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 100456 0.8 0.496649
Target:  5'- uCACAgCCGAGGACGAGgaccggccuuuuuaaACAUCCGGUCa -3'
miRNA:   3'- cGUGU-GGUUCCUGUUC---------------UGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 55768 0.73 0.841251
Target:  5'- gGCGgGCCAGGGGCAgcgAGGCcaccacgCUGGCCa -3'
miRNA:   3'- -CGUgUGGUUCCUGU---UCUGua-----GGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 155591 0.79 0.532636
Target:  5'- gGCACACC-GGGGCu-GGCcUCCGGCCc -3'
miRNA:   3'- -CGUGUGGuUCCUGuuCUGuAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 48328 0.74 0.787991
Target:  5'- uGCugGCgGugguGGGCcAGGCGUCCAGUCu -3'
miRNA:   3'- -CGugUGgUu---CCUGuUCUGUAGGUCGG- -5'
29083 5' -51.3 NC_006146.1 + 129129 0.73 0.849477
Target:  5'- cGgGCGCCcGGGcGCAGGGCcUCCGGCg -3'
miRNA:   3'- -CgUGUGGuUCC-UGUUCUGuAGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 164393 0.72 0.857497
Target:  5'- cGC-CGCCAAGGGuCAGGAgCAUCCaaGGaCCa -3'
miRNA:   3'- -CGuGUGGUUCCU-GUUCU-GUAGG--UC-GG- -5'
29083 5' -51.3 NC_006146.1 + 102536 0.78 0.562287
Target:  5'- aGCAcCGCCAcgGGGAUcuccacaGAGGCGUCCAGCa -3'
miRNA:   3'- -CGU-GUGGU--UCCUG-------UUCUGUAGGUCGg -5'
29083 5' -51.3 NC_006146.1 + 50415 0.74 0.768963
Target:  5'- gGC-CGCCAGGGACGgcAGGCAggccgcaagcuUCgCGGCCa -3'
miRNA:   3'- -CGuGUGGUUCCUGU--UCUGU-----------AG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.