Results 81 - 100 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29085 | 5' | -58 | NC_006146.1 | + | 49504 | 0.67 | 0.792124 |
Target: 5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3' miRNA: 3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 122836 | 0.68 | 0.783203 |
Target: 5'- -gCGAGUacguggaCCgCACGCUgCCCGGGGCg -3' miRNA: 3'- gaGUUUAga-----GG-GUGCGGgGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 103415 | 0.68 | 0.783203 |
Target: 5'- gUCGug-CUCCCcuCGCUCCuggaCCGGGGCu -3' miRNA: 3'- gAGUuuaGAGGGu-GCGGGG----GGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 36200 | 0.68 | 0.783203 |
Target: 5'- uCUCAGA-CaCCUggGCUCCCCGGGaGCg -3' miRNA: 3'- -GAGUUUaGaGGGugCGGGGGGCUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 116641 | 0.68 | 0.774154 |
Target: 5'- uCUCGGaggacGUUUCCCGCcugaccgggGCCgCCCaGAGGCu -3' miRNA: 3'- -GAGUU-----UAGAGGGUG---------CGGgGGG-CUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 14383 | 0.68 | 0.764984 |
Target: 5'- uCUCGc--CUCCCGCuCCCCuCCG-GGCc -3' miRNA: 3'- -GAGUuuaGAGGGUGcGGGG-GGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 65912 | 0.68 | 0.764984 |
Target: 5'- gUUGAguGUCUCCCcagaGCCCCCuCGGGaGCc -3' miRNA: 3'- gAGUU--UAGAGGGug--CGGGGG-GCUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 2217 | 0.68 | 0.764984 |
Target: 5'- -cCAGcagUUCCUGCGCCUCCUG-GGCa -3' miRNA: 3'- gaGUUua-GAGGGUGCGGGGGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 44720 | 0.68 | 0.755702 |
Target: 5'- aUCAGGUgcCUgCCCACugGCCCCCCuuGAuGGCu -3' miRNA: 3'- gAGUUUA--GA-GGGUG--CGGGGGG--CU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 121925 | 0.68 | 0.755702 |
Target: 5'- aUCAGcUCUCCCagACGCUcauCCCCGGGaaGCu -3' miRNA: 3'- gAGUUuAGAGGG--UGCGG---GGGGCUC--CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 7460 | 0.68 | 0.755702 |
Target: 5'- -gCGAAaCU-UCACGCCCCCCGAGa- -3' miRNA: 3'- gaGUUUaGAgGGUGCGGGGGGCUCcg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 20301 | 0.68 | 0.755702 |
Target: 5'- --aAGAUCgCCCACaUCCCCUGcAGGCg -3' miRNA: 3'- gagUUUAGaGGGUGcGGGGGGC-UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 53403 | 0.68 | 0.746316 |
Target: 5'- ------aUUCCCugGCCUCCagGAGGCc -3' miRNA: 3'- gaguuuaGAGGGugCGGGGGg-CUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 16019 | 0.68 | 0.746316 |
Target: 5'- -gCGAGg--CCC-UGCCCCCCGAcgGGCu -3' miRNA: 3'- gaGUUUagaGGGuGCGGGGGGCU--CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 115139 | 0.68 | 0.746316 |
Target: 5'- cCUCGcugC-CCCugGCCCgCCGccGGGCg -3' miRNA: 3'- -GAGUuuaGaGGGugCGGGgGGC--UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 75796 | 0.68 | 0.746316 |
Target: 5'- aCUCGGgcGUCUCggGCGCCgCCUuCGAGGCc -3' miRNA: 3'- -GAGUU--UAGAGggUGCGG-GGG-GCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 2404 | 0.68 | 0.746316 |
Target: 5'- gCUCuguuGGUC-CCCG-GCCCCCCGAccguggacgugaGGCc -3' miRNA: 3'- -GAGu---UUAGaGGGUgCGGGGGGCU------------CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 117088 | 0.68 | 0.740639 |
Target: 5'- -cCGAcUCUUCCA-GCCCCCCGcuauggacgccgcgcGGGCc -3' miRNA: 3'- gaGUUuAGAGGGUgCGGGGGGC---------------UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 75517 | 0.68 | 0.736836 |
Target: 5'- cCUgAAGU-UCCUaugGCGCCCaCCGAGGCu -3' miRNA: 3'- -GAgUUUAgAGGG---UGCGGGgGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 14898 | 0.68 | 0.736836 |
Target: 5'- gUCu--UCUCgaCCGUGCCCCCgGAGGUg -3' miRNA: 3'- gAGuuuAGAG--GGUGCGGGGGgCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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