miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 168763 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 139147 0.67 0.818032
Target:  5'- -aCGGGggCUCCC--GUCCCCCGGGGg -3'
miRNA:   3'- gaGUUUa-GAGGGugCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 127356 0.67 0.815502
Target:  5'- -cCGcGUCUCCUacugcuucuugcgcGCGCCCCUCgugGAGGUg -3'
miRNA:   3'- gaGUuUAGAGGG--------------UGCGGGGGG---CUCCG- -5'
29085 5' -58 NC_006146.1 + 20088 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 23166 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 26244 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 17010 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 156059 0.67 0.809546
Target:  5'- cCUCGgc-CUCCCGCGgCCCC--GGGCc -3'
miRNA:   3'- -GAGUuuaGAGGGUGCgGGGGgcUCCG- -5'
29085 5' -58 NC_006146.1 + 53304 0.67 0.809546
Target:  5'- cCUCc--UCUCCCugGCCggaguccgagCCCGAGGa -3'
miRNA:   3'- -GAGuuuAGAGGGugCGGg---------GGGCUCCg -5'
29085 5' -58 NC_006146.1 + 102305 0.67 0.809546
Target:  5'- -gCAGAUCgCCCACcuGCaCgCCCgGGGGCa -3'
miRNA:   3'- gaGUUUAGaGGGUG--CG-G-GGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 116176 0.67 0.809546
Target:  5'- --uGAGUCUCCCcucggcCGCCCugaCCCG-GGCc -3'
miRNA:   3'- gagUUUAGAGGGu-----GCGGG---GGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 77268 0.67 0.809546
Target:  5'- cCUCAAcGUCUUCUuCGgCCUCCGGGGa -3'
miRNA:   3'- -GAGUU-UAGAGGGuGCgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 29322 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32716 0.67 0.809546
Target:  5'- gUCAAuUCcCCCAUGCCCUCaUGuauGGCa -3'
miRNA:   3'- gAGUUuAGaGGGUGCGGGGG-GCu--CCG- -5'
29085 5' -58 NC_006146.1 + 13933 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 119239 0.67 0.800907
Target:  5'- uUCuGAGUCccggcaccggCCCugGCCCCCUGGGaGUc -3'
miRNA:   3'- gAG-UUUAGa---------GGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 116415 0.67 0.800907
Target:  5'- --gGAGUCUCCUcccacgACGCCaUCCUGAGGa -3'
miRNA:   3'- gagUUUAGAGGG------UGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 117556 0.67 0.800907
Target:  5'- -cCAAGaC-CUCACGCCgCCCCGcGGCc -3'
miRNA:   3'- gaGUUUaGaGGGUGCGG-GGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 125946 0.67 0.799162
Target:  5'- gUCGAGUCccccggggccucCCCGCGCCCCUggccacgaGAGGUu -3'
miRNA:   3'- gAGUUUAGa-----------GGGUGCGGGGGg-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 4018 0.67 0.795654
Target:  5'- aCUCAcg-CUCCUccuCGCCCUCCGcuccccccucccgccGGGCu -3'
miRNA:   3'- -GAGUuuaGAGGGu--GCGGGGGGC---------------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.