miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 11028 0.66 0.850298
Target:  5'- --gGGGUCUCCCGCGCgaCCUCUGAaaGCa -3'
miRNA:   3'- gagUUUAGAGGGUGCG--GGGGGCUc-CG- -5'
29085 5' -58 NC_006146.1 + 20169 0.66 0.849527
Target:  5'- --gAGAUCcCUCGCcucuuugcagaggGCCCCCgGGGGCg -3'
miRNA:   3'- gagUUUAGaGGGUG-------------CGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 47940 0.66 0.842497
Target:  5'- ------cCUCCC-CGCCUCCCGcugcguggacAGGCu -3'
miRNA:   3'- gaguuuaGAGGGuGCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 110438 0.66 0.842497
Target:  5'- ------cCUCUCAcCGCUCCCCGcGGCc -3'
miRNA:   3'- gaguuuaGAGGGU-GCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 153945 0.66 0.842497
Target:  5'- --gGAAgg-CCCGcCGCUCCCCGuuGGGCa -3'
miRNA:   3'- gagUUUagaGGGU-GCGGGGGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 126122 0.66 0.842497
Target:  5'- -cCAGAUCcccggccuggguUCCC-CGCCCgCCG-GGCc -3'
miRNA:   3'- gaGUUUAG------------AGGGuGCGGGgGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 128909 0.66 0.841707
Target:  5'- uUCGug-CUCgUcCGCCCCCCaguggacGAGGCa -3'
miRNA:   3'- gAGUuuaGAGgGuGCGGGGGG-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 69609 0.67 0.834515
Target:  5'- -gCGAgacGUCcaggCCCACG-UCCCCGGGGUa -3'
miRNA:   3'- gaGUU---UAGa---GGGUGCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 159874 0.67 0.834515
Target:  5'- cCUCccuGGUCUCCU-CGCagagggCCUCGAGGCc -3'
miRNA:   3'- -GAGu--UUAGAGGGuGCGg-----GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129399 0.67 0.834515
Target:  5'- gUCAGccgggcgucGUC-CCCGCGCaCCCCaAGGCc -3'
miRNA:   3'- gAGUU---------UAGaGGGUGCGgGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 170627 0.67 0.834515
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacGGGUg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc----UCCG- -5'
29085 5' -58 NC_006146.1 + 52898 0.67 0.826357
Target:  5'- -cCGAG-C-CCCGCauggucugcgugGCCCCCCGGGGg -3'
miRNA:   3'- gaGUUUaGaGGGUG------------CGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 126099 0.67 0.825532
Target:  5'- -aCAGAggUCCCaguauuagacgcuGCGCCCCCCuGAgcccGGCa -3'
miRNA:   3'- gaGUUUagAGGG-------------UGCGGGGGG-CU----CCG- -5'
29085 5' -58 NC_006146.1 + 32990 0.67 0.825532
Target:  5'- -aCAAAUUUCagugccgCCGCuaCCCCCGGGGg -3'
miRNA:   3'- gaGUUUAGAG-------GGUGcgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 68515 0.67 0.818032
Target:  5'- -aCAGAUa--CCACcaGCUCCCCGAGGa -3'
miRNA:   3'- gaGUUUAgagGGUG--CGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 162382 0.67 0.818032
Target:  5'- cCUUGGcgCgCCCGCGCCcgggaCCCCGguGGGCc -3'
miRNA:   3'- -GAGUUuaGaGGGUGCGG-----GGGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 167831 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 139147 0.67 0.818032
Target:  5'- -aCGGGggCUCCC--GUCCCCCGGGGg -3'
miRNA:   3'- gaGUUUa-GAGGGugCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 169695 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 99098 0.67 0.818032
Target:  5'- -cCAGGUCcgcacgUCCCGCgccuGCCCUCCGgccucAGGCg -3'
miRNA:   3'- gaGUUUAG------AGGGUG----CGGGGGGC-----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.