miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 23166 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 23256 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 24099 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 25241 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 26244 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 26334 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 27177 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 28319 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 29322 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 29412 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 31312 0.7 0.678432
Target:  5'- -----uUCUCCUccuCGCCCCCCGcagccucauuGGGCu -3'
miRNA:   3'- gaguuuAGAGGGu--GCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 32121 0.69 0.698133
Target:  5'- -gCAGGggUgCCACGUCaCCCCGGGGUg -3'
miRNA:   3'- gaGUUUagAgGGUGCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32716 0.67 0.809546
Target:  5'- gUCAAuUCcCCCAUGCCCUCaUGuauGGCa -3'
miRNA:   3'- gAGUUuAGaGGGUGCGGGGG-GCu--CCG- -5'
29085 5' -58 NC_006146.1 + 32990 0.67 0.825532
Target:  5'- -aCAAAUUUCagugccgCCGCuaCCCCCGGGGg -3'
miRNA:   3'- gaGUUUAGAG-------GGUGcgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 33185 0.69 0.688305
Target:  5'- -cCGGGUaggCCCGgGCaCCCCCGGGGg -3'
miRNA:   3'- gaGUUUAga-GGGUgCG-GGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 36200 0.68 0.783203
Target:  5'- uCUCAGA-CaCCUggGCUCCCCGGGaGCg -3'
miRNA:   3'- -GAGUUUaGaGGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 37916 0.78 0.247712
Target:  5'- aUCAccgcaccgcGGUCUCCaC-CGCCCCCCGAGGa -3'
miRNA:   3'- gAGU---------UUAGAGG-GuGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 38352 0.66 0.857912
Target:  5'- -------aUCUCACGCUCcgaCCCGAGGCc -3'
miRNA:   3'- gaguuuagAGGGUGCGGG---GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 40406 0.66 0.857912
Target:  5'- ------cCUCCCGCgggggcaaaguaGCCaCCCGGGGCg -3'
miRNA:   3'- gaguuuaGAGGGUG------------CGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 40516 0.66 0.865331
Target:  5'- gCUCGGGgg-CCCACGUguuUUCCCGGGGg -3'
miRNA:   3'- -GAGUUUagaGGGUGCG---GGGGGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.