miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 12930 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 13064 0.66 0.879567
Target:  5'- gCUCGGug--CCCGuC-CCCUCCGGGGCc -3'
miRNA:   3'- -GAGUUuagaGGGU-GcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 13933 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 14022 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 14383 0.68 0.764984
Target:  5'- uCUCGc--CUCCCGCuCCCCuCCG-GGCc -3'
miRNA:   3'- -GAGUuuaGAGGGUGcGGGG-GGCuCCG- -5'
29085 5' -58 NC_006146.1 + 14866 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 14898 0.68 0.736836
Target:  5'- gUCu--UCUCgaCCGUGCCCCCgGAGGUg -3'
miRNA:   3'- gAGuuuAGAG--GGUGCGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 16007 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 16019 0.68 0.746316
Target:  5'- -gCGAGg--CCC-UGCCCCCCGAcgGGCu -3'
miRNA:   3'- gaGUUUagaGGGuGCGGGGGGCU--CCG- -5'
29085 5' -58 NC_006146.1 + 17010 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 17100 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 19085 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 19695 0.73 0.452942
Target:  5'- -gCAAAUCUCCUGCGUCCUCUgguccacgggggagGAGGCc -3'
miRNA:   3'- gaGUUUAGAGGGUGCGGGGGG--------------CUCCG- -5'
29085 5' -58 NC_006146.1 + 20088 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 20169 0.66 0.849527
Target:  5'- --gAGAUCcCUCGCcucuuugcagaggGCCCCCgGGGGCg -3'
miRNA:   3'- gagUUUAGaGGGUG-------------CGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 20178 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 20301 0.68 0.755702
Target:  5'- --aAGAUCgCCCACaUCCCCUGcAGGCg -3'
miRNA:   3'- gagUUUAGaGGGUGcGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 20952 0.73 0.498814
Target:  5'- ------aCUCCCACGCCugggcgccccucaaCCCCGAGGg -3'
miRNA:   3'- gaguuuaGAGGGUGCGG--------------GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 21021 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 22163 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.