miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 139147 0.67 0.818032
Target:  5'- -aCGGGggCUCCC--GUCCCCCGGGGg -3'
miRNA:   3'- gaGUUUa-GAGGGugCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 137699 0.7 0.678432
Target:  5'- gCUCccc-CUCCgGCcuCCCCCCGGGGUg -3'
miRNA:   3'- -GAGuuuaGAGGgUGc-GGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 135951 0.69 0.698133
Target:  5'- -gCAGGggUgCCACGUCaCCCCGGGGUg -3'
miRNA:   3'- gaGUUUagAgGGUGCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 130562 0.66 0.872551
Target:  5'- -gCAGAUC-CCCACGCCUaccaCCacGGCu -3'
miRNA:   3'- gaGUUUAGaGGGUGCGGGg---GGcuCCG- -5'
29085 5' -58 NC_006146.1 + 129896 0.69 0.717623
Target:  5'- uUCGAccacguGUCUCUC-UGCgCCCUGGGGCg -3'
miRNA:   3'- gAGUU------UAGAGGGuGCGgGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129825 0.73 0.482973
Target:  5'- cCUCGc-UgUCCCugGCCucccuccaCCCCGAGGCc -3'
miRNA:   3'- -GAGUuuAgAGGGugCGG--------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129469 0.66 0.865331
Target:  5'- -cCAGAUCUaggagCCUAgaaaacucgggUGCCCCCC-AGGCg -3'
miRNA:   3'- gaGUUUAGA-----GGGU-----------GCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 129399 0.67 0.834515
Target:  5'- gUCAGccgggcgucGUC-CCCGCGCaCCCCaAGGCc -3'
miRNA:   3'- gAGUU---------UAGaGGGUGCGgGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 128909 0.66 0.841707
Target:  5'- uUCGug-CUCgUcCGCCCCCCaguggacGAGGCa -3'
miRNA:   3'- gAGUuuaGAGgGuGCGGGGGG-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 127356 0.67 0.815502
Target:  5'- -cCGcGUCUCCUacugcuucuugcgcGCGCCCCUCgugGAGGUg -3'
miRNA:   3'- gaGUuUAGAGGG--------------UGCGGGGGG---CUCCG- -5'
29085 5' -58 NC_006146.1 + 126922 0.7 0.648631
Target:  5'- aCUCAGccuccUCUCCCgcuggcaggaugGCGCUCUCCGGGcGCg -3'
miRNA:   3'- -GAGUUu----AGAGGG------------UGCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 126500 0.71 0.578995
Target:  5'- cCUCGAGgaaggCgccgugCCCggccccacACGCCCCCCG-GGCg -3'
miRNA:   3'- -GAGUUUa----Ga-----GGG--------UGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 126122 0.66 0.842497
Target:  5'- -cCAGAUCcccggccuggguUCCC-CGCCCgCCG-GGCc -3'
miRNA:   3'- gaGUUUAG------------AGGGuGCGGGgGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 126099 0.67 0.825532
Target:  5'- -aCAGAggUCCCaguauuagacgcuGCGCCCCCCuGAgcccGGCa -3'
miRNA:   3'- gaGUUUagAGGG-------------UGCGGGGGG-CU----CCG- -5'
29085 5' -58 NC_006146.1 + 125946 0.67 0.799162
Target:  5'- gUCGAGUCccccggggccucCCCGCGCCCCUggccacgaGAGGUu -3'
miRNA:   3'- gAGUUUAGa-----------GGGUGCGGGGGg-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 124724 0.71 0.598809
Target:  5'- aCUCGGGccgCUCUCugGCCCcacccgaguuCCUGGGGCu -3'
miRNA:   3'- -GAGUUUa--GAGGGugCGGG----------GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 124611 0.66 0.865331
Target:  5'- gCUCGAG-CUCgaC-CGCCgCCaCCGGGGCu -3'
miRNA:   3'- -GAGUUUaGAGg-GuGCGG-GG-GGCUCCG- -5'
29085 5' -58 NC_006146.1 + 122836 0.68 0.783203
Target:  5'- -gCGAGUacguggaCCgCACGCUgCCCGGGGCg -3'
miRNA:   3'- gaGUUUAga-----GG-GUGCGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 122318 0.69 0.707909
Target:  5'- uUCuggcCUCCC-UGaCCCCCGAGGCc -3'
miRNA:   3'- gAGuuuaGAGGGuGCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 121948 0.73 0.482973
Target:  5'- -cCAAucgCUCCCACaaCUCCCUGAGGCu -3'
miRNA:   3'- gaGUUua-GAGGGUGc-GGGGGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.