miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 170627 0.67 0.834515
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacGGGUg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc----UCCG- -5'
29085 5' -58 NC_006146.1 + 169729 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 169695 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 168797 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 168763 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 167865 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 167831 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 165951 0.69 0.727269
Target:  5'- uCUCGuggC-CCCugG-UCCCCGGGGCa -3'
miRNA:   3'- -GAGUuuaGaGGGugCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 164357 0.66 0.879567
Target:  5'- uCUCcuuUCUCCuCACGCCCgCCaucuGGUg -3'
miRNA:   3'- -GAGuuuAGAGG-GUGCGGGgGGcu--CCG- -5'
29085 5' -58 NC_006146.1 + 162382 0.67 0.818032
Target:  5'- cCUUGGcgCgCCCGCGCCcgggaCCCCGguGGGCc -3'
miRNA:   3'- -GAGUUuaGaGGGUGCGG-----GGGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 160988 0.66 0.879567
Target:  5'- gCUCGcgggCUCCguCGCCUCCUGccuGGCc -3'
miRNA:   3'- -GAGUuua-GAGGguGCGGGGGGCu--CCG- -5'
29085 5' -58 NC_006146.1 + 159874 0.67 0.834515
Target:  5'- cCUCccuGGUCUCCU-CGCagagggCCUCGAGGCc -3'
miRNA:   3'- -GAGu--UUAGAGGGuGCGg-----GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 156059 0.67 0.809546
Target:  5'- cCUCGgc-CUCCCGCGgCCCC--GGGCc -3'
miRNA:   3'- -GAGUuuaGAGGGUGCgGGGGgcUCCG- -5'
29085 5' -58 NC_006146.1 + 155740 0.69 0.698133
Target:  5'- uUCAGcgCUUCCacgGCGUCgCCCGAGGa -3'
miRNA:   3'- gAGUUuaGAGGG---UGCGGgGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 153945 0.66 0.842497
Target:  5'- --gGAAgg-CCCGcCGCUCCCCGuuGGGCa -3'
miRNA:   3'- gagUUUagaGGGU-GCGGGGGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 152649 0.69 0.727269
Target:  5'- --------aCCCACGCUCCCC-AGGCu -3'
miRNA:   3'- gaguuuagaGGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 150713 0.78 0.271846
Target:  5'- ------cCUCCUGCGCCCCCgGGGGCc -3'
miRNA:   3'- gaguuuaGAGGGUGCGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 146809 0.7 0.678432
Target:  5'- cCUCGA----CCCGCGUCCCaggCGAGGCc -3'
miRNA:   3'- -GAGUUuagaGGGUGCGGGGg--GCUCCG- -5'
29085 5' -58 NC_006146.1 + 140754 0.66 0.865331
Target:  5'- uCUCGGAUgCguggccaugCCCAC-CCCCCUgcaugGGGGCg -3'
miRNA:   3'- -GAGUUUA-Ga--------GGGUGcGGGGGG-----CUCCG- -5'
29085 5' -58 NC_006146.1 + 140028 0.66 0.871838
Target:  5'- gUCAGGUUcuuguguUCCCACGUCCCUgCGuucuGGUg -3'
miRNA:   3'- gAGUUUAG-------AGGGUGCGGGGG-GCu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.