miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 20952 0.73 0.498814
Target:  5'- ------aCUCCCACGCCugggcgccccucaaCCCCGAGGg -3'
miRNA:   3'- gaguuuaGAGGGUGCGG--------------GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 93059 0.72 0.520603
Target:  5'- gCUCAAAg-UCCCAC-CCCCCCGccGCc -3'
miRNA:   3'- -GAGUUUagAGGGUGcGGGGGGCucCG- -5'
29085 5' -58 NC_006146.1 + 81023 0.72 0.549559
Target:  5'- aUCAGccgC-CCCAauCGCCCCCCacuGAGGCa -3'
miRNA:   3'- gAGUUua-GaGGGU--GCGGGGGG---CUCCG- -5'
29085 5' -58 NC_006146.1 + 112698 0.72 0.559325
Target:  5'- uCUCGGGUCUggCCCGCaGCagggcgUCCCUGAGGCc -3'
miRNA:   3'- -GAGUUUAGA--GGGUG-CG------GGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 7278 0.71 0.578995
Target:  5'- --aAAAUCcugcCCCACGCCUUCCGGGGa -3'
miRNA:   3'- gagUUUAGa---GGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 96138 0.71 0.578995
Target:  5'- aCUCuu-UCcugcgUCUugGCCCCCCGgAGGCu -3'
miRNA:   3'- -GAGuuuAGa----GGGugCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 126500 0.71 0.578995
Target:  5'- cCUCGAGgaaggCgccgugCCCggccccacACGCCCCCCG-GGCg -3'
miRNA:   3'- -GAGUUUa----Ga-----GGG--------UGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 113084 0.71 0.592853
Target:  5'- aCUCAucAAUCaauuuggugaggagCUCGCGCUCCCCGGGGg -3'
miRNA:   3'- -GAGU--UUAGa-------------GGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 119891 0.71 0.598809
Target:  5'- uUCAG--UUCCCAUucuCCCCCCGuGGCg -3'
miRNA:   3'- gAGUUuaGAGGGUGc--GGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 124724 0.71 0.598809
Target:  5'- aCUCGGGccgCUCUCugGCCCcacccgaguuCCUGGGGCu -3'
miRNA:   3'- -GAGUUUa--GAGGGugCGGG----------GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 104181 0.71 0.618716
Target:  5'- aUCcAGUCgcagggccgUCUGCGCCCCCaCGGGGCc -3'
miRNA:   3'- gAGuUUAGa--------GGGUGCGGGGG-GCUCCG- -5'
29085 5' -58 NC_006146.1 + 100313 0.71 0.618716
Target:  5'- aUCAGAgUCUCCaCAUccuCCCCCCGgacGGGCa -3'
miRNA:   3'- gAGUUU-AGAGG-GUGc--GGGGGGC---UCCG- -5'
29085 5' -58 NC_006146.1 + 56668 0.7 0.628688
Target:  5'- cCUCccuGAggUgCCGgGCCCCCUGGGGCu -3'
miRNA:   3'- -GAGu--UUagAgGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 54548 0.7 0.628688
Target:  5'- uUgAGAUCUCCgAucucCGCCCCaCCGuGGGCa -3'
miRNA:   3'- gAgUUUAGAGGgU----GCGGGG-GGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 126922 0.7 0.648631
Target:  5'- aCUCAGccuccUCUCCCgcuggcaggaugGCGCUCUCCGGGcGCg -3'
miRNA:   3'- -GAGUUu----AGAGGG------------UGCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 119082 0.7 0.668524
Target:  5'- ------cCUCCgGCGCUUCCCGAGGa -3'
miRNA:   3'- gaguuuaGAGGgUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 137699 0.7 0.678432
Target:  5'- gCUCccc-CUCCgGCcuCCCCCCGGGGUg -3'
miRNA:   3'- -GAGuuuaGAGGgUGc-GGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 146809 0.7 0.678432
Target:  5'- cCUCGA----CCCGCGUCCCaggCGAGGCc -3'
miRNA:   3'- -GAGUUuagaGGGUGCGGGGg--GCUCCG- -5'
29085 5' -58 NC_006146.1 + 31312 0.7 0.678432
Target:  5'- -----uUCUCCUccuCGCCCCCCGcagccucauuGGGCu -3'
miRNA:   3'- gaguuuAGAGGGu--GCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 33185 0.69 0.688305
Target:  5'- -cCGGGUaggCCCGgGCaCCCCCGGGGg -3'
miRNA:   3'- gaGUUUAga-GGGUgCG-GGGGGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.