miRNA display CGI


Results 21 - 40 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 47899 0.69 0.707909
Target:  5'- gUCAGcgCUCCgAgaagaaGUCCCCCGuGGCc -3'
miRNA:   3'- gAGUUuaGAGGgUg-----CGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 31312 0.7 0.678432
Target:  5'- -----uUCUCCUccuCGCCCCCCGcagccucauuGGGCu -3'
miRNA:   3'- gaguuuAGAGGGu--GCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 115724 0.73 0.492262
Target:  5'- cCUCAAaggugacagcGUCcaCCCugGCCUCCCGGcGGCu -3'
miRNA:   3'- -GAGUU----------UAGa-GGGugCGGGGGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 150713 0.78 0.271846
Target:  5'- ------cCUCCUGCGCCCCCgGGGGCc -3'
miRNA:   3'- gaguuuaGAGGGUGCGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 20088 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 75517 0.68 0.736836
Target:  5'- cCUgAAGU-UCCUaugGCGCCCaCCGAGGCu -3'
miRNA:   3'- -GAgUUUAgAGGG---UGCGGGgGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 119082 0.7 0.668524
Target:  5'- ------cCUCCgGCGCUUCCCGAGGa -3'
miRNA:   3'- gaguuuaGAGGgUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 80270 0.78 0.265641
Target:  5'- gCUCAGGUCUggacacCCUAC-CUCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGA------GGGUGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 48044 0.68 0.736836
Target:  5'- gCUCGGGUCgUCCA-GCgCCCCG-GGCa -3'
miRNA:   3'- -GAGUUUAGaGGGUgCGgGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 66854 0.79 0.22007
Target:  5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3'
miRNA:   3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 137699 0.7 0.678432
Target:  5'- gCUCccc-CUCCgGCcuCCCCCCGGGGUg -3'
miRNA:   3'- -GAGuuuaGAGGgUGc-GGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129896 0.69 0.717623
Target:  5'- uUCGAccacguGUCUCUC-UGCgCCCUGGGGCg -3'
miRNA:   3'- gAGUU------UAGAGGGuGCGgGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 100313 0.71 0.618716
Target:  5'- aUCAGAgUCUCCaCAUccuCCCCCCGgacGGGCa -3'
miRNA:   3'- gAGUUU-AGAGG-GUGc--GGGGGGC---UCCG- -5'
29085 5' -58 NC_006146.1 + 93059 0.72 0.520603
Target:  5'- gCUCAAAg-UCCCAC-CCCCCCGccGCc -3'
miRNA:   3'- -GAGUUUagAGGGUGcGGGGGGCucCG- -5'
29085 5' -58 NC_006146.1 + 27177 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 14866 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32716 0.67 0.809546
Target:  5'- gUCAAuUCcCCCAUGCCCUCaUGuauGGCa -3'
miRNA:   3'- gAGUUuAGaGGGUGCGGGGG-GCu--CCG- -5'
29085 5' -58 NC_006146.1 + 23166 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 119239 0.67 0.800907
Target:  5'- uUCuGAGUCccggcaccggCCCugGCCCCCUGGGaGUc -3'
miRNA:   3'- gAG-UUUAGa---------GGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 2404 0.68 0.746316
Target:  5'- gCUCuguuGGUC-CCCG-GCCCCCCGAccguggacgugaGGCc -3'
miRNA:   3'- -GAGu---UUAGaGGGUgCGGGGGGCU------------CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.