miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 17010 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 119082 0.7 0.668524
Target:  5'- ------cCUCCgGCGCUUCCCGAGGa -3'
miRNA:   3'- gaguuuaGAGGgUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 80270 0.78 0.265641
Target:  5'- gCUCAGGUCUggacacCCUAC-CUCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGA------GGGUGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 13933 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 66854 0.79 0.22007
Target:  5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3'
miRNA:   3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 110438 0.66 0.842497
Target:  5'- ------cCUCUCAcCGCUCCCCGcGGCc -3'
miRNA:   3'- gaguuuaGAGGGU-GCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 14866 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 170627 0.67 0.834515
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacGGGUg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc----UCCG- -5'
29085 5' -58 NC_006146.1 + 52898 0.67 0.826357
Target:  5'- -cCGAG-C-CCCGCauggucugcgugGCCCCCCGGGGg -3'
miRNA:   3'- gaGUUUaGaGGGUG------------CGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 169695 0.67 0.818032
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacggguGGGCg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc--------UCCG- -5'
29085 5' -58 NC_006146.1 + 139147 0.67 0.818032
Target:  5'- -aCGGGggCUCCC--GUCCCCCGGGGg -3'
miRNA:   3'- gaGUUUa-GAGGGugCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 32716 0.67 0.809546
Target:  5'- gUCAAuUCcCCCAUGCCCUCaUGuauGGCa -3'
miRNA:   3'- gAGUUuAGaGGGUGCGGGGG-GCu--CCG- -5'
29085 5' -58 NC_006146.1 + 23166 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 7460 0.68 0.755702
Target:  5'- -gCGAAaCU-UCACGCCCCCCGAGa- -3'
miRNA:   3'- gaGUUUaGAgGGUGCGGGGGGCUCcg -5'
29085 5' -58 NC_006146.1 + 48044 0.68 0.736836
Target:  5'- gCUCGGGUCgUCCA-GCgCCCCG-GGCa -3'
miRNA:   3'- -GAGUUUAGaGGGUgCGgGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 47899 0.69 0.707909
Target:  5'- gUCAGcgCUCCgAgaagaaGUCCCCCGuGGCc -3'
miRNA:   3'- gAGUUuaGAGGgUg-----CGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 31312 0.7 0.678432
Target:  5'- -----uUCUCCUccuCGCCCCCCGcagccucauuGGGCu -3'
miRNA:   3'- gaguuuAGAGGGu--GCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 100313 0.71 0.618716
Target:  5'- aUCAGAgUCUCCaCAUccuCCCCCCGgacGGGCa -3'
miRNA:   3'- gAGUUU-AGAGG-GUGc--GGGGGGC---UCCG- -5'
29085 5' -58 NC_006146.1 + 93059 0.72 0.520603
Target:  5'- gCUCAAAg-UCCCAC-CCCCCCGccGCc -3'
miRNA:   3'- -GAGUUUagAGGGUGcGGGGGGCucCG- -5'
29085 5' -58 NC_006146.1 + 27177 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.