miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 130562 0.66 0.872551
Target:  5'- -gCAGAUC-CCCACGCCUaccaCCacGGCu -3'
miRNA:   3'- gaGUUUAGaGGGUGCGGGg---GGcuCCG- -5'
29085 5' -58 NC_006146.1 + 25241 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 12930 0.66 0.872551
Target:  5'- cCUCuggaggCCCugGCCCcgCCCGGuGGCc -3'
miRNA:   3'- -GAGuuuagaGGGugCGGG--GGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 169729 0.66 0.872551
Target:  5'- gCUCAGAUCg---GCGCgggggagCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGagggUGCGg------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 111861 0.66 0.865331
Target:  5'- -aCAAAUC-CCUuguaaagagacGgGUCCCUCGGGGCa -3'
miRNA:   3'- gaGUUUAGaGGG-----------UgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 20178 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 47940 0.66 0.842497
Target:  5'- ------cCUCCC-CGCCUCCCGcugcguggacAGGCu -3'
miRNA:   3'- gaguuuaGAGGGuGCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 68515 0.67 0.818032
Target:  5'- -aCAGAUa--CCACcaGCUCCCCGAGGa -3'
miRNA:   3'- gaGUUUAgagGGUG--CGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 20088 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 53304 0.67 0.809546
Target:  5'- cCUCc--UCUCCCugGCCggaguccgagCCCGAGGa -3'
miRNA:   3'- -GAGuuuAGAGGGugCGGg---------GGGCUCCg -5'
29085 5' -58 NC_006146.1 + 156059 0.67 0.809546
Target:  5'- cCUCGgc-CUCCCGCGgCCCC--GGGCc -3'
miRNA:   3'- -GAGUuuaGAGGGUGCgGGGGgcUCCG- -5'
29085 5' -58 NC_006146.1 + 32716 0.67 0.809546
Target:  5'- gUCAAuUCcCCCAUGCCCUCaUGuauGGCa -3'
miRNA:   3'- gAGUUuAGaGGGUGCGGGGG-GCu--CCG- -5'
29085 5' -58 NC_006146.1 + 29322 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 26244 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 23166 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 17010 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 13933 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 4018 0.67 0.795654
Target:  5'- aCUCAcg-CUCCUccuCGCCCUCCGcuccccccucccgccGGGCu -3'
miRNA:   3'- -GAGUuuaGAGGGu--GCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 119082 0.67 0.818032
Target:  5'- --------cUCCACGCCgCCCCGGGGa -3'
miRNA:   3'- gaguuuagaGGGUGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 49504 0.67 0.792124
Target:  5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3'
miRNA:   3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.