miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 10005 0.69 0.69519
Target:  5'- -aCGGuUUUgCCACGCCCauuuuaacauaaaaCCCGGGGCa -3'
miRNA:   3'- gaGUUuAGAgGGUGCGGG--------------GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 2303 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 99398 0.69 0.698133
Target:  5'- -cCGcuUCUCCaACGCCuCCCCcAGGCa -3'
miRNA:   3'- gaGUuuAGAGGgUGCGG-GGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 1371 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 440 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 135951 0.69 0.698133
Target:  5'- -gCAGGggUgCCACGUCaCCCCGGGGUg -3'
miRNA:   3'- gaGUUUagAgGGUGCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32121 0.69 0.698133
Target:  5'- -gCAGGggUgCCACGUCaCCCCGGGGUg -3'
miRNA:   3'- gaGUUUagAgGGUGCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 155740 0.69 0.698133
Target:  5'- uUCAGcgCUUCCacgGCGUCgCCCGAGGa -3'
miRNA:   3'- gAGUUuaGAGGG---UGCGGgGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 3235 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 47899 0.69 0.707909
Target:  5'- gUCAGcgCUCCgAgaagaaGUCCCCCGuGGCc -3'
miRNA:   3'- gAGUUuaGAGGgUg-----CGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 122318 0.69 0.707909
Target:  5'- uUCuggcCUCCC-UGaCCCCCGAGGCc -3'
miRNA:   3'- gAGuuuaGAGGGuGCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 373 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 129896 0.69 0.717623
Target:  5'- uUCGAccacguGUCUCUC-UGCgCCCUGGGGCg -3'
miRNA:   3'- gAGUU------UAGAGGGuGCGgGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 1304 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 3168 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 2236 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 165951 0.69 0.727269
Target:  5'- uCUCGuggC-CCCugG-UCCCCGGGGCa -3'
miRNA:   3'- -GAGUuuaGaGGGugCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 152649 0.69 0.727269
Target:  5'- --------aCCCACGCUCCCC-AGGCu -3'
miRNA:   3'- gaguuuagaGGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 59733 0.69 0.727269
Target:  5'- -gCGcAUCUCUCGC-CUCCCCGAGcGCc -3'
miRNA:   3'- gaGUuUAGAGGGUGcGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 107805 0.69 0.731105
Target:  5'- --aGGGUCUCCUucaGCGaggccaccgcauguuCCCCCCGAGaGCa -3'
miRNA:   3'- gagUUUAGAGGG---UGC---------------GGGGGGCUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.