miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 41025 0.66 0.872551
Target:  5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3'
miRNA:   3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 42357 0.76 0.325705
Target:  5'- gCUCcaGGAUCUCCCGCGCCgCCagggugggcgaGGGGCg -3'
miRNA:   3'- -GAG--UUUAGAGGGUGCGGgGGg----------CUCCG- -5'
29085 5' -58 NC_006146.1 + 42700 0.66 0.857912
Target:  5'- ----cGUCUggCCCggcgccgcgGCGCCCCCCuGGGCc -3'
miRNA:   3'- gaguuUAGA--GGG---------UGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 44720 0.68 0.755702
Target:  5'- aUCAGGUgcCUgCCCACugGCCCCCCuuGAuGGCu -3'
miRNA:   3'- gAGUUUA--GA-GGGUG--CGGGGGG--CU-CCG- -5'
29085 5' -58 NC_006146.1 + 47555 0.66 0.857912
Target:  5'- -cCAGAgCUCCCucgGCGagaCCCCUGAcGGCc -3'
miRNA:   3'- gaGUUUaGAGGG---UGCg--GGGGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 47849 0.66 0.865331
Target:  5'- uCUCGAGgacccUCUCCUccaGCGCCCggaCCuGGGCc -3'
miRNA:   3'- -GAGUUU-----AGAGGG---UGCGGGg--GGcUCCG- -5'
29085 5' -58 NC_006146.1 + 47899 0.69 0.707909
Target:  5'- gUCAGcgCUCCgAgaagaaGUCCCCCGuGGCc -3'
miRNA:   3'- gAGUUuaGAGGgUg-----CGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 47940 0.66 0.842497
Target:  5'- ------cCUCCC-CGCCUCCCGcugcguggacAGGCu -3'
miRNA:   3'- gaguuuaGAGGGuGCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 48044 0.68 0.736836
Target:  5'- gCUCGGGUCgUCCA-GCgCCCCG-GGCa -3'
miRNA:   3'- -GAGUUUAGaGGGUgCGgGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 49504 0.67 0.792124
Target:  5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3'
miRNA:   3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 52613 0.66 0.872551
Target:  5'- gUCAGcugggccaUCUCGUGCCCCCUGAGGa -3'
miRNA:   3'- gAGUUuag-----AGGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 52898 0.67 0.826357
Target:  5'- -cCGAG-C-CCCGCauggucugcgugGCCCCCCGGGGg -3'
miRNA:   3'- gaGUUUaGaGGGUG------------CGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 53304 0.67 0.809546
Target:  5'- cCUCc--UCUCCCugGCCggaguccgagCCCGAGGa -3'
miRNA:   3'- -GAGuuuAGAGGGugCGGg---------GGGCUCCg -5'
29085 5' -58 NC_006146.1 + 53403 0.68 0.746316
Target:  5'- ------aUUCCCugGCCUCCagGAGGCc -3'
miRNA:   3'- gaguuuaGAGGGugCGGGGGg-CUCCG- -5'
29085 5' -58 NC_006146.1 + 54548 0.7 0.628688
Target:  5'- uUgAGAUCUCCgAucucCGCCCCaCCGuGGGCa -3'
miRNA:   3'- gAgUUUAGAGGgU----GCGGGG-GGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 56668 0.7 0.628688
Target:  5'- cCUCccuGAggUgCCGgGCCCCCUGGGGCu -3'
miRNA:   3'- -GAGu--UUagAgGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 59733 0.69 0.727269
Target:  5'- -gCGcAUCUCUCGC-CUCCCCGAGcGCc -3'
miRNA:   3'- gaGUuUAGAGGGUGcGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 60633 0.66 0.872551
Target:  5'- aUCAcGUCUgCgAUgGCuCCCCCGAGuGCa -3'
miRNA:   3'- gAGUuUAGAgGgUG-CG-GGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 65912 0.68 0.764984
Target:  5'- gUUGAguGUCUCCCcagaGCCCCCuCGGGaGCc -3'
miRNA:   3'- gAGUU--UAGAGGGug--CGGGGG-GCUC-CG- -5'
29085 5' -58 NC_006146.1 + 66854 0.79 0.22007
Target:  5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3'
miRNA:   3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.