Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2909 | 3' | -61.2 | NC_001493.1 | + | 36768 | 1.09 | 0.000812 |
Target: 5'- cCCCACGGCCACCACCAGCAGCGCAGUg -3' miRNA: 3'- -GGGUGCCGGUGGUGGUCGUCGCGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 124867 | 0.71 | 0.353442 |
Target: 5'- aUCACGGCCuccccccucgccGCCAuccCCGGgAGCGCGGUc -3' miRNA: 3'- gGGUGCCGG------------UGGU---GGUCgUCGCGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 9313 | 0.71 | 0.353442 |
Target: 5'- aUCACGGCCuccccccucgccGCCAuccCCGGgAGCGCGGUc -3' miRNA: 3'- gGGUGCCGG------------UGGU---GGUCgUCGCGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 63108 | 0.71 | 0.36902 |
Target: 5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3' miRNA: 3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 63672 | 0.71 | 0.36902 |
Target: 5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3' miRNA: 3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 63615 | 0.71 | 0.36902 |
Target: 5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3' miRNA: 3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 63369 | 0.71 | 0.36902 |
Target: 5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3' miRNA: 3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 64363 | 0.7 | 0.418498 |
Target: 5'- cCCCACGGCgaaGCCcagugauuuuCCAGguGaCGCGGUg -3' miRNA: 3'- -GGGUGCCGg--UGGu---------GGUCguC-GCGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 10714 | 0.7 | 0.427128 |
Target: 5'- gCCGCGGUCACCgaucGCCGaaauaCAGCGUGGUa -3' miRNA: 3'- gGGUGCCGGUGG----UGGUc----GUCGCGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 126268 | 0.7 | 0.427128 |
Target: 5'- gCCGCGGUCACCgaucGCCGaaauaCAGCGUGGUa -3' miRNA: 3'- gGGUGCCGGUGG----UGGUc----GUCGCGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 120274 | 0.69 | 0.435864 |
Target: 5'- gUUugGGCaCACCcggggGCCGGCAGCgGCGGg -3' miRNA: 3'- gGGugCCG-GUGG-----UGGUCGUCG-CGUCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 41677 | 0.69 | 0.4718 |
Target: 5'- cUCCAgGGCCGCCGCUAcaaagaaCGGCGCGa- -3' miRNA: 3'- -GGGUgCCGGUGGUGGUc------GUCGCGUca -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 62577 | 0.68 | 0.490323 |
Target: 5'- gCCACGGCCACgggCACgGGgGGCGaGGUc -3' miRNA: 3'- gGGUGCCGGUG---GUGgUCgUCGCgUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 63063 | 0.68 | 0.49971 |
Target: 5'- uCCCGCGGgCGUCGCCGGU-GCGguGg -3' miRNA: 3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 58809 | 0.68 | 0.508226 |
Target: 5'- uCCCGCgGGCCgACCgACCGGUaucgaccGGCGUGGa -3' miRNA: 3'- -GGGUG-CCGG-UGG-UGGUCG-------UCGCGUCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 111558 | 0.68 | 0.509176 |
Target: 5'- --aGCGGUCuCCGCgAGCAGCGCGu- -3' miRNA: 3'- gggUGCCGGuGGUGgUCGUCGCGUca -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 50438 | 0.68 | 0.509176 |
Target: 5'- gCCCACGaCCGCaCACCAuCGGC-CAGUg -3' miRNA: 3'- -GGGUGCcGGUG-GUGGUcGUCGcGUCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 37048 | 0.68 | 0.518717 |
Target: 5'- aCCACaGaCGCaCACCGGCGGgGCGGa -3' miRNA: 3'- gGGUGcCgGUG-GUGGUCGUCgCGUCa -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 42119 | 0.68 | 0.528328 |
Target: 5'- aCUAUGGaCCACCuCCAaguGCGGCGCcGUg -3' miRNA: 3'- gGGUGCC-GGUGGuGGU---CGUCGCGuCA- -5' |
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2909 | 3' | -61.2 | NC_001493.1 | + | 121327 | 0.68 | 0.528328 |
Target: 5'- cCCCGaGGUCGgCAuCCAGCGGUGUGGg -3' miRNA: 3'- -GGGUgCCGGUgGU-GGUCGUCGCGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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