miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2909 3' -61.2 NC_001493.1 + 31741 0.66 0.634112
Target:  5'- -aCACGGUCACCGCgucucgauccaucaCGG-AGCGCGGg -3'
miRNA:   3'- ggGUGCCGGUGGUG--------------GUCgUCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 126752 0.67 0.557531
Target:  5'- gCCACGGCCGucaaauccCCguGCUgaGGCGGCGCAu- -3'
miRNA:   3'- gGGUGCCGGU--------GG--UGG--UCGUCGCGUca -5'
2909 3' -61.2 NC_001493.1 + 43885 0.67 0.557531
Target:  5'- gCCGCgacggucugaggGGCCGUCACCAGguGCGCu-- -3'
miRNA:   3'- gGGUG------------CCGGUGGUGGUCguCGCGuca -5'
2909 3' -61.2 NC_001493.1 + 9561 0.67 0.587176
Target:  5'- gCUCACGGCCuACCAC--GCGGUGCu-- -3'
miRNA:   3'- -GGGUGCCGG-UGGUGguCGUCGCGuca -5'
2909 3' -61.2 NC_001493.1 + 125115 0.67 0.587176
Target:  5'- gCUCACGGCCuACCAC--GCGGUGCu-- -3'
miRNA:   3'- -GGGUGCCGG-UGGUGguCGUCGCGuca -5'
2909 3' -61.2 NC_001493.1 + 5150 0.67 0.587176
Target:  5'- cCCCcCGGUCACCgggGCCgAGC-GUGCAGc -3'
miRNA:   3'- -GGGuGCCGGUGG---UGG-UCGuCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 120705 0.67 0.587176
Target:  5'- cCCCcCGGUCACCgggGCCgAGC-GUGCAGc -3'
miRNA:   3'- -GGGuGCCGGUGG---UGG-UCGuCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 73439 0.66 0.607105
Target:  5'- aCCACGucGCUGCucagugugCACC-GCAGCGCAGg -3'
miRNA:   3'- gGGUGC--CGGUG--------GUGGuCGUCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 61701 0.66 0.627106
Target:  5'- -gCAgGGCgugACCACCAGCuGCGCGa- -3'
miRNA:   3'- ggGUgCCGg--UGGUGGUCGuCGCGUca -5'
2909 3' -61.2 NC_001493.1 + 11198 0.67 0.557531
Target:  5'- gCCACGGCCGucaaauccCCguGCUgaGGCGGCGCAu- -3'
miRNA:   3'- gGGUGCCGGU--------GG--UGG--UCGUCGCGUca -5'
2909 3' -61.2 NC_001493.1 + 30891 0.67 0.54774
Target:  5'- cCCCACaucGCCcccauGCCACCGGUcacGGCGUGGa -3'
miRNA:   3'- -GGGUGc--CGG-----UGGUGGUCG---UCGCGUCa -5'
2909 3' -61.2 NC_001493.1 + 20669 0.68 0.538004
Target:  5'- uCCCGaGaGCCGCCACCAGUccGUGCAcGUu -3'
miRNA:   3'- -GGGUgC-CGGUGGUGGUCGu-CGCGU-CA- -5'
2909 3' -61.2 NC_001493.1 + 63369 0.71 0.36902
Target:  5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3'
miRNA:   3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5'
2909 3' -61.2 NC_001493.1 + 63615 0.71 0.36902
Target:  5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3'
miRNA:   3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5'
2909 3' -61.2 NC_001493.1 + 63672 0.71 0.36902
Target:  5'- uCCCGCGGgCAUCGCCGGU-GUGguGg -3'
miRNA:   3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5'
2909 3' -61.2 NC_001493.1 + 10714 0.7 0.427128
Target:  5'- gCCGCGGUCACCgaucGCCGaaauaCAGCGUGGUa -3'
miRNA:   3'- gGGUGCCGGUGG----UGGUc----GUCGCGUCA- -5'
2909 3' -61.2 NC_001493.1 + 126268 0.7 0.427128
Target:  5'- gCCGCGGUCACCgaucGCCGaaauaCAGCGUGGUa -3'
miRNA:   3'- gGGUGCCGGUGG----UGGUc----GUCGCGUCA- -5'
2909 3' -61.2 NC_001493.1 + 63063 0.68 0.49971
Target:  5'- uCCCGCGGgCGUCGCCGGU-GCGguGg -3'
miRNA:   3'- -GGGUGCCgGUGGUGGUCGuCGCguCa -5'
2909 3' -61.2 NC_001493.1 + 50438 0.68 0.509176
Target:  5'- gCCCACGaCCGCaCACCAuCGGC-CAGUg -3'
miRNA:   3'- -GGGUGCcGGUG-GUGGUcGUCGcGUCA- -5'
2909 3' -61.2 NC_001493.1 + 111558 0.68 0.509176
Target:  5'- --aGCGGUCuCCGCgAGCAGCGCGu- -3'
miRNA:   3'- gggUGCCGGuGGUGgUCGUCGCGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.