miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2909 5' -51.7 NC_001493.1 + 29777 0.66 0.982681
Target:  5'- cGcAGGCGGAGCaGAUCGcGAa---- -3'
miRNA:   3'- aCuUCCGCCUCGaCUAGCuCUguaac -5'
2909 5' -51.7 NC_001493.1 + 97223 0.66 0.982681
Target:  5'- -cGAGGUGGAGCcUGucCGGGGCAUc- -3'
miRNA:   3'- acUUCCGCCUCG-ACuaGCUCUGUAac -5'
2909 5' -51.7 NC_001493.1 + 84135 0.66 0.982681
Target:  5'- aUGGAGGCcggGGAGUUucgCGGGGCGUUu -3'
miRNA:   3'- -ACUUCCG---CCUCGAcuaGCUCUGUAAc -5'
2909 5' -51.7 NC_001493.1 + 91689 0.66 0.982681
Target:  5'- cGAGGGgGGAGCaGGUgGAGGa---- -3'
miRNA:   3'- aCUUCCgCCUCGaCUAgCUCUguaac -5'
2909 5' -51.7 NC_001493.1 + 99231 0.66 0.980547
Target:  5'- -cAAGGCcggaacGGAGCUGGUgaCGAGACucgGUUGc -3'
miRNA:   3'- acUUCCG------CCUCGACUA--GCUCUG---UAAC- -5'
2909 5' -51.7 NC_001493.1 + 128256 0.67 0.970022
Target:  5'- gUGAGGGgGGAGagagaUGGgccagUGAGACcgUGa -3'
miRNA:   3'- -ACUUCCgCCUCg----ACUa----GCUCUGuaAC- -5'
2909 5' -51.7 NC_001493.1 + 89553 0.67 0.966853
Target:  5'- gGAAGGgGGGGUUGGUccgcacggucaCGAGACc--- -3'
miRNA:   3'- aCUUCCgCCUCGACUA-----------GCUCUGuaac -5'
2909 5' -51.7 NC_001493.1 + 9866 0.67 0.966853
Target:  5'- cGGAGGCccuauugauGGAGCcGGUCGAGccGCAg-- -3'
miRNA:   3'- aCUUCCG---------CCUCGaCUAGCUC--UGUaac -5'
2909 5' -51.7 NC_001493.1 + 125420 0.67 0.966853
Target:  5'- cGGAGGCccuauugauGGAGCcGGUCGAGccGCAg-- -3'
miRNA:   3'- aCUUCCG---------CCUCGaCUAGCUC--UGUaac -5'
2909 5' -51.7 NC_001493.1 + 57651 0.68 0.950536
Target:  5'- cGAGGGCGG-GCUGGccgcguucgaugaaUCGAuGAUAUg- -3'
miRNA:   3'- aCUUCCGCCuCGACU--------------AGCU-CUGUAac -5'
2909 5' -51.7 NC_001493.1 + 38007 0.68 0.947448
Target:  5'- aUGggGGCGa---UGAUCGGGGCcgUGu -3'
miRNA:   3'- -ACuuCCGCcucgACUAGCUCUGuaAC- -5'
2909 5' -51.7 NC_001493.1 + 31923 0.68 0.938435
Target:  5'- gGggGGUGGAGaCccgcgcuccgugaugGAUCGAGACGc-- -3'
miRNA:   3'- aCuuCCGCCUC-Ga--------------CUAGCUCUGUaac -5'
2909 5' -51.7 NC_001493.1 + 102482 0.68 0.937935
Target:  5'- gGggGGaguguugGGAGCUGAcCGAGACc--- -3'
miRNA:   3'- aCuuCCg------CCUCGACUaGCUCUGuaac -5'
2909 5' -51.7 NC_001493.1 + 65993 0.69 0.915792
Target:  5'- gGggGGUGGGGCguucGUCgGGGACGUg- -3'
miRNA:   3'- aCuuCCGCCUCGac--UAG-CUCUGUAac -5'
2909 5' -51.7 NC_001493.1 + 45515 0.7 0.896462
Target:  5'- cGAAGGCGGAGCgcauuGUCGAugaaccacuuGACAc-- -3'
miRNA:   3'- aCUUCCGCCUCGac---UAGCU----------CUGUaac -5'
2909 5' -51.7 NC_001493.1 + 88474 0.7 0.889512
Target:  5'- cGGAGGCGGAcggGgUGAUCGGGcccACGUa- -3'
miRNA:   3'- aCUUCCGCCU---CgACUAGCUC---UGUAac -5'
2909 5' -51.7 NC_001493.1 + 90066 0.7 0.882314
Target:  5'- aGAGGGUGGuAGCcgaccuguUGAUCGAGugGg-- -3'
miRNA:   3'- aCUUCCGCC-UCG--------ACUAGCUCugUaac -5'
2909 5' -51.7 NC_001493.1 + 102472 0.7 0.867196
Target:  5'- gGAAGGUGGGGCcucggcgGGUCGGGGgGUc- -3'
miRNA:   3'- aCUUCCGCCUCGa------CUAGCUCUgUAac -5'
2909 5' -51.7 NC_001493.1 + 74620 0.74 0.7082
Target:  5'- gGGAGGCGGGGgUGA-CGGGACu--- -3'
miRNA:   3'- aCUUCCGCCUCgACUaGCUCUGuaac -5'
2909 5' -51.7 NC_001493.1 + 36729 1.1 0.005353
Target:  5'- cUGAAGGCGGAGCUGAUCGAGACAUUGg -3'
miRNA:   3'- -ACUUCCGCCUCGACUAGCUCUGUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.