Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29090 | 5' | -54.1 | NC_006146.1 | + | 136753 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136846 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136939 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 137032 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 137125 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 137218 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 137311 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136289 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136196 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135174 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135267 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135360 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135453 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135546 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135639 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135731 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135824 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 135917 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136010 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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29090 | 5' | -54.1 | NC_006146.1 | + | 136103 | 0.67 | 0.956776 |
Target: 5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3' miRNA: 3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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