Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29090 | 5' | -54.1 | NC_006146.1 | + | 88870 | 0.69 | 0.888018 |
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Target: 5'- cCUGGGGCUguUGugGCUGcaaCUCCACa -3' miRNA: 3'- -GACCUUGA--GCugCGACcuaGAGGUGc -5' |
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| 29090 | 5' | -54.1 | NC_006146.1 | + | 61833 | 0.7 | 0.8666 |
|
Target: 5'- -cGGggUgaaggUGACGCUuaauccGGAUCUCUACGu -3' miRNA: 3'- gaCCuuGa----GCUGCGA------CCUAGAGGUGC- -5' |
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| 29090 | 5' | -54.1 | NC_006146.1 | + | 124500 | 0.7 | 0.851262 |
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Target: 5'- -cGGGACUCGGC-CUGG-UCUCgGCc -3' miRNA: 3'- gaCCUUGAGCUGcGACCuAGAGgUGc -5' |
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| 29090 | 5' | -54.1 | NC_006146.1 | + | 123449 | 0.7 | 0.843293 |
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Target: 5'- cCUGGAGCUCGAgaGCaUGGcccagaaCUCCAUGg -3' miRNA: 3'- -GACCUUGAGCUg-CG-ACCua-----GAGGUGC- -5' |
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| 29090 | 5' | -54.1 | NC_006146.1 | + | 168698 | 0.71 | 0.79173 |
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Target: 5'- -aGGAACU----GCUGGAUUUCCGCGg -3' miRNA: 3'- gaCCUUGAgcugCGACCUAGAGGUGC- -5' |
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| 29090 | 5' | -54.1 | NC_006146.1 | + | 132357 | 0.73 | 0.725208 |
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Target: 5'- -aGGAACUgGACGgggucCUGcGUCUCCACGg -3' miRNA: 3'- gaCCUUGAgCUGC-----GACcUAGAGGUGC- -5' |
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| 29090 | 5' | -54.1 | NC_006146.1 | + | 120536 | 1.1 | 0.004343 |
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Target: 5'- aCUGGAACUCGACGCUGGAUCUCCACGg -3' miRNA: 3'- -GACCUUGAGCUGCGACCUAGAGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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