miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 64222 0.66 0.593355
Target:  5'- -gCAGGaGGCacaUCUGCGCCUgggCCGg -3'
miRNA:   3'- ugGUCC-CCGg--AGACGCGGGagaGGCg -5'
29099 3' -64 NC_006146.1 + 47412 0.66 0.593355
Target:  5'- gGCCAGGGccaGCCUCaGC-UCCUCcaugCCGUc -3'
miRNA:   3'- -UGGUCCC---CGGAGaCGcGGGAGa---GGCG- -5'
29099 3' -64 NC_006146.1 + 36711 0.66 0.593355
Target:  5'- cACCAGGGGCCUauuaCUGagacaUGCCCguggugUUCUGa -3'
miRNA:   3'- -UGGUCCCCGGA----GAC-----GCGGGa-----GAGGCg -5'
29099 3' -64 NC_006146.1 + 114730 0.66 0.593355
Target:  5'- uGCCAGGGGCagaacGCaGCCUaucCUCUGCu -3'
miRNA:   3'- -UGGUCCCCGgaga-CG-CGGGa--GAGGCG- -5'
29099 3' -64 NC_006146.1 + 161783 0.66 0.593355
Target:  5'- -gCGGGGGCCugaaUCUuCGCCUgcauuuugcuUCUCUGCc -3'
miRNA:   3'- ugGUCCCCGG----AGAcGCGGG----------AGAGGCG- -5'
29099 3' -64 NC_006146.1 + 42025 0.66 0.593355
Target:  5'- uUCGGGcccGCCUCcGCcCCCUCUUCGUg -3'
miRNA:   3'- uGGUCCc--CGGAGaCGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 160358 0.66 0.592392
Target:  5'- -aCGGGGaacuggcGUCUCaGCGCCCUUggcaggCCGCc -3'
miRNA:   3'- ugGUCCC-------CGGAGaCGCGGGAGa-----GGCG- -5'
29099 3' -64 NC_006146.1 + 99210 0.66 0.583742
Target:  5'- uCCAGGGaggccgcgGCCUCggcGCGCCCgaccaCCGUc -3'
miRNA:   3'- uGGUCCC--------CGGAGa--CGCGGGaga--GGCG- -5'
29099 3' -64 NC_006146.1 + 156073 0.66 0.583742
Target:  5'- gGCCccGGGCC-CgagaccGUGCCCUcCUCCGg -3'
miRNA:   3'- -UGGucCCCGGaGa-----CGCGGGA-GAGGCg -5'
29099 3' -64 NC_006146.1 + 127130 0.66 0.583742
Target:  5'- gACCuGGuGGuccCCUCUGCGgcccacUCCUCUCUGUc -3'
miRNA:   3'- -UGGuCC-CC---GGAGACGC------GGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 155595 0.66 0.583742
Target:  5'- cACCGGGgcuGGCCUCcgGC-CCCUcCUCCc- -3'
miRNA:   3'- -UGGUCC---CCGGAGa-CGcGGGA-GAGGcg -5'
29099 3' -64 NC_006146.1 + 125954 0.66 0.583742
Target:  5'- cCCcGGGGCCUCcccGCGCCC-CUggCCa- -3'
miRNA:   3'- uGGuCCCCGGAGa--CGCGGGaGA--GGcg -5'
29099 3' -64 NC_006146.1 + 122631 0.66 0.583742
Target:  5'- gGCCGGGGcCCUCUuucGCGCCaggacggcggCgggggccCUCCGCg -3'
miRNA:   3'- -UGGUCCCcGGAGA---CGCGG----------Ga------GAGGCG- -5'
29099 3' -64 NC_006146.1 + 53709 0.66 0.574161
Target:  5'- -gCGGGGGCacguUCccCGUCCUCUCCGg -3'
miRNA:   3'- ugGUCCCCGg---AGacGCGGGAGAGGCg -5'
29099 3' -64 NC_006146.1 + 168840 0.66 0.574161
Target:  5'- uGCCGacGaGGGCCaacUCUcGgGCCCUCUCUugGCg -3'
miRNA:   3'- -UGGU--C-CCCGG---AGA-CgCGGGAGAGG--CG- -5'
29099 3' -64 NC_006146.1 + 115090 0.66 0.574161
Target:  5'- gGCCGGGacGGCCUCUuccacCGCCC-CgagUCGCu -3'
miRNA:   3'- -UGGUCC--CCGGAGAc----GCGGGaGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 33365 0.66 0.564617
Target:  5'- cGCCGGuggguccgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 33119 0.66 0.564617
Target:  5'- cGCCGGcggguucgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 33243 0.66 0.564617
Target:  5'- cGCCGGcggguccgccGGGCCgCUGC-CCCgCUCCGg -3'
miRNA:   3'- -UGGUC----------CCCGGaGACGcGGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 81469 0.66 0.564617
Target:  5'- cGCCGGGGGCCaacUCUacaaCGUCCUa--CGCg -3'
miRNA:   3'- -UGGUCCCCGG---AGAc---GCGGGAgagGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.