Results 1 - 20 of 157 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29099 | 3' | -64 | NC_006146.1 | + | 126398 | 1.1 | 0.000486 |
Target: 5'- cACCAGGGGCCUCUGCGCCCUCUCCGCg -3' miRNA: 3'- -UGGUCCCCGGAGACGCGGGAGAGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 55706 | 0.79 | 0.089416 |
Target: 5'- cGCCGGGGGgCUCUGCccGCCgCUggcCUCCGCg -3' miRNA: 3'- -UGGUCCCCgGAGACG--CGG-GA---GAGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 54186 | 0.79 | 0.091687 |
Target: 5'- cGCCAGGGGgaUCUGCaccuGCCCggUCUCCGCa -3' miRNA: 3'- -UGGUCCCCggAGACG----CGGG--AGAGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 30205 | 0.77 | 0.117596 |
Target: 5'- aGCCAGaGGGCCgCUGCGCCCg--CCGg -3' miRNA: 3'- -UGGUC-CCCGGaGACGCGGGagaGGCg -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135186 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136301 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135372 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135465 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135558 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136580 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135279 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136394 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135743 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135929 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136208 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136115 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136022 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135836 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 136487 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
|||||||
29099 | 3' | -64 | NC_006146.1 | + | 135651 | 0.76 | 0.136271 |
Target: 5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3' miRNA: 3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home