miRNA display CGI


Results 21 - 40 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 135836 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136022 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 135743 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136115 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 135929 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137044 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137137 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136487 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136394 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136301 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 136208 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 102901 0.75 0.16148
Target:  5'- cGCCAGGGGCCguguggcguggCUGCGCCCcaagaUCgugggCUGCc -3'
miRNA:   3'- -UGGUCCCCGGa----------GACGCGGG-----AGa----GGCG- -5'
29099 3' -64 NC_006146.1 + 41771 0.74 0.204762
Target:  5'- cGCCGGaGGCC-CUGCGCCCgggcgC-CCGCu -3'
miRNA:   3'- -UGGUCcCCGGaGACGCGGGa----GaGGCG- -5'
29099 3' -64 NC_006146.1 + 102824 0.73 0.219584
Target:  5'- cGCgCGGGGG-CUCUGCGCUugCUCgcgCCGCu -3'
miRNA:   3'- -UG-GUCCCCgGAGACGCGG--GAGa--GGCG- -5'
29099 3' -64 NC_006146.1 + 123704 0.73 0.226809
Target:  5'- gGCCAGGGGCCUg-GCGCUcggggcggcggcgggCUCUCCcCa -3'
miRNA:   3'- -UGGUCCCCGGAgaCGCGG---------------GAGAGGcG- -5'
29099 3' -64 NC_006146.1 + 130530 0.72 0.257742
Target:  5'- cGCCGGGcGGCgaCcaggGgGCCUUCUCCGCc -3'
miRNA:   3'- -UGGUCC-CCGgaGa---CgCGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 55923 0.72 0.269598
Target:  5'- uCCAGGaGGCgUUcccCGCCCUCUCUGCc -3'
miRNA:   3'- uGGUCC-CCGgAGac-GCGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 104182 0.72 0.275689
Target:  5'- uCCAGucgcaGGGCCgUCUGCGCCCccaCggggCCGCa -3'
miRNA:   3'- uGGUC-----CCCGG-AGACGCGGGa--Ga---GGCG- -5'
29099 3' -64 NC_006146.1 + 145890 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 148968 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.