miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 62775 0.66 0.564617
Target:  5'- uACCAGcguguGGGUgUCUGCcCCCUgUCUGUu -3'
miRNA:   3'- -UGGUC-----CCCGgAGACGcGGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 167656 0.66 0.555115
Target:  5'- uGCCGGGGGCC-CggggGCG-UgUC-CCGCg -3'
miRNA:   3'- -UGGUCCCCGGaGa---CGCgGgAGaGGCG- -5'
29099 3' -64 NC_006146.1 + 114130 0.66 0.555115
Target:  5'- cACCgAGGaGGCC--UGCGCgUgCUCCGCg -3'
miRNA:   3'- -UGG-UCC-CCGGagACGCGgGaGAGGCG- -5'
29099 3' -64 NC_006146.1 + 155867 0.66 0.555115
Target:  5'- cCCGGcGGGCCcuggCcagGCGCCC-CUCCcugGCa -3'
miRNA:   3'- uGGUC-CCCGGa---Ga--CGCGGGaGAGG---CG- -5'
29099 3' -64 NC_006146.1 + 18880 0.66 0.555115
Target:  5'- -gCGGGGGCCUCaGCcCCCaCUgUGCu -3'
miRNA:   3'- ugGUCCCCGGAGaCGcGGGaGAgGCG- -5'
29099 3' -64 NC_006146.1 + 54385 0.66 0.544718
Target:  5'- gGCCAgacgauGGGuggugccGCCUCcucGCGCCgCUCcUCCGCg -3'
miRNA:   3'- -UGGU------CCC-------CGGAGa--CGCGG-GAG-AGGCG- -5'
29099 3' -64 NC_006146.1 + 148971 0.67 0.536258
Target:  5'- cGCUAGGGguuuugGCCUCUGCcagcuuccccGCCC-CUCCu- -3'
miRNA:   3'- -UGGUCCC------CGGAGACG----------CGGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 114313 0.67 0.536258
Target:  5'- gACCGGcGGCgggCUCgGCGCCCgg-CCGCc -3'
miRNA:   3'- -UGGUCcCCG---GAGaCGCGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 94318 0.67 0.536258
Target:  5'- aAUCcGGuGCCUCUGCgGCCCcaUC-CCGCa -3'
miRNA:   3'- -UGGuCCcCGGAGACG-CGGG--AGaGGCG- -5'
29099 3' -64 NC_006146.1 + 11228 0.67 0.536258
Target:  5'- aACCGuGGGGCCaUCUGCGagCUUUagggucCCGCu -3'
miRNA:   3'- -UGGU-CCCCGG-AGACGCggGAGA------GGCG- -5'
29099 3' -64 NC_006146.1 + 24292 0.67 0.526913
Target:  5'- gGCCGGGGGCUggacgCUGUuuCCC-CUCCa- -3'
miRNA:   3'- -UGGUCCCCGGa----GACGc-GGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 10838 0.67 0.526913
Target:  5'- -aCAGGuGCCUgaCUGUGCCgCUCcUCUGCg -3'
miRNA:   3'- ugGUCCcCGGA--GACGCGG-GAG-AGGCG- -5'
29099 3' -64 NC_006146.1 + 52925 0.67 0.526913
Target:  5'- cCCGGGGGCg-CUG-GCCUcgUCCGCc -3'
miRNA:   3'- uGGUCCCCGgaGACgCGGGagAGGCG- -5'
29099 3' -64 NC_006146.1 + 91901 0.67 0.526913
Target:  5'- gGCCuGGGcucGCUUUUGCGaCCC-CUCCGa -3'
miRNA:   3'- -UGGuCCC---CGGAGACGC-GGGaGAGGCg -5'
29099 3' -64 NC_006146.1 + 45680 0.67 0.525981
Target:  5'- cGCCAGGGaGCggaagggCUCUgaGCGCCCg--UCGCa -3'
miRNA:   3'- -UGGUCCC-CG-------GAGA--CGCGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 47743 0.67 0.517629
Target:  5'- uCC-GGGGCCUCcucgcGCGCCCUggcgaguacggcCUCCa- -3'
miRNA:   3'- uGGuCCCCGGAGa----CGCGGGA------------GAGGcg -5'
29099 3' -64 NC_006146.1 + 120848 0.67 0.517629
Target:  5'- cCUGGaGGGCCUgcuggaCUGCGCCUccCUCCuGCg -3'
miRNA:   3'- uGGUC-CCCGGA------GACGCGGGa-GAGG-CG- -5'
29099 3' -64 NC_006146.1 + 143419 0.67 0.508411
Target:  5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3'
miRNA:   3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5'
29099 3' -64 NC_006146.1 + 122041 0.67 0.508411
Target:  5'- cGCCuGGaGGCCgacggCUucGCGCCCgcCUCCGa -3'
miRNA:   3'- -UGGuCC-CCGGa----GA--CGCGGGa-GAGGCg -5'
29099 3' -64 NC_006146.1 + 101039 0.67 0.508411
Target:  5'- gACCu-GGGCCUCUaCGCCCgacCUCC-Cg -3'
miRNA:   3'- -UGGucCCCGGAGAcGCGGGa--GAGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.