miRNA display CGI


Results 41 - 60 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 45533 0.69 0.412384
Target:  5'- gGCCu-GGGCCUCcuugggcuugGcCGCCCUggcCUCCGCg -3'
miRNA:   3'- -UGGucCCCGGAGa---------C-GCGGGA---GAGGCG- -5'
29099 3' -64 NC_006146.1 + 45680 0.67 0.525981
Target:  5'- cGCCAGGGaGCggaagggCUCUgaGCGCCCg--UCGCa -3'
miRNA:   3'- -UGGUCCC-CG-------GAGA--CGCGGGagaGGCG- -5'
29099 3' -64 NC_006146.1 + 47412 0.66 0.593355
Target:  5'- gGCCAGGGccaGCCUCaGC-UCCUCcaugCCGUc -3'
miRNA:   3'- -UGGUCCC---CGGAGaCGcGGGAGa---GGCG- -5'
29099 3' -64 NC_006146.1 + 47743 0.67 0.517629
Target:  5'- uCC-GGGGCCUCcucgcGCGCCCUggcgaguacggcCUCCa- -3'
miRNA:   3'- uGGuCCCCGGAGa----CGCGGGA------------GAGGcg -5'
29099 3' -64 NC_006146.1 + 48359 0.68 0.437488
Target:  5'- gGCCAGcGGGCCggccucgaguUCcGCGaaccaCCCgggCUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGG----------AGaCGC-----GGGa--GAGGCG- -5'
29099 3' -64 NC_006146.1 + 50908 0.7 0.349996
Target:  5'- gGCCu-GGGCCUCcGUGCCCaagaugugUCUCCGa -3'
miRNA:   3'- -UGGucCCCGGAGaCGCGGG--------AGAGGCg -5'
29099 3' -64 NC_006146.1 + 52336 0.7 0.357417
Target:  5'- gGCCGGGGuGCCcggggCgGCGUCCUUUUgGCa -3'
miRNA:   3'- -UGGUCCC-CGGa----GaCGCGGGAGAGgCG- -5'
29099 3' -64 NC_006146.1 + 52925 0.67 0.526913
Target:  5'- cCCGGGGGCg-CUG-GCCUcgUCCGCc -3'
miRNA:   3'- uGGUCCCCGgaGACgCGGGagAGGCG- -5'
29099 3' -64 NC_006146.1 + 53709 0.66 0.574161
Target:  5'- -gCGGGGGCacguUCccCGUCCUCUCCGg -3'
miRNA:   3'- ugGUCCCCGg---AGacGCGGGAGAGGCg -5'
29099 3' -64 NC_006146.1 + 54186 0.79 0.091687
Target:  5'- cGCCAGGGGgaUCUGCaccuGCCCggUCUCCGCa -3'
miRNA:   3'- -UGGUCCCCggAGACG----CGGG--AGAGGCG- -5'
29099 3' -64 NC_006146.1 + 54385 0.66 0.544718
Target:  5'- gGCCAgacgauGGGuggugccGCCUCcucGCGCCgCUCcUCCGCg -3'
miRNA:   3'- -UGGU------CCC-------CGGAGa--CGCGG-GAG-AGGCG- -5'
29099 3' -64 NC_006146.1 + 54582 0.67 0.49019
Target:  5'- gAUCAGGGaCCUCUGUGCCUcCUUCc- -3'
miRNA:   3'- -UGGUCCCcGGAGACGCGGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 55706 0.79 0.089416
Target:  5'- cGCCGGGGGgCUCUGCccGCCgCUggcCUCCGCg -3'
miRNA:   3'- -UGGUCCCCgGAGACG--CGG-GA---GAGGCG- -5'
29099 3' -64 NC_006146.1 + 55923 0.72 0.269598
Target:  5'- uCCAGGaGGCgUUcccCGCCCUCUCUGCc -3'
miRNA:   3'- uGGUCC-CCGgAGac-GCGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 62775 0.66 0.564617
Target:  5'- uACCAGcguguGGGUgUCUGCcCCCUgUCUGUu -3'
miRNA:   3'- -UGGUC-----CCCGgAGACGcGGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 64222 0.66 0.593355
Target:  5'- -gCAGGaGGCacaUCUGCGCCUgggCCGg -3'
miRNA:   3'- ugGUCC-CCGg--AGACGCGGGagaGGCg -5'
29099 3' -64 NC_006146.1 + 68932 0.7 0.364948
Target:  5'- gACC-GGGGCC--UGgGCCCaggagaUCUCCGCc -3'
miRNA:   3'- -UGGuCCCCGGagACgCGGG------AGAGGCG- -5'
29099 3' -64 NC_006146.1 + 71254 0.68 0.428181
Target:  5'- gGCCuggcgggGGGcGGCCUCUaCGCCUUcCUCCGg -3'
miRNA:   3'- -UGG-------UCC-CCGGAGAcGCGGGA-GAGGCg -5'
29099 3' -64 NC_006146.1 + 71870 0.7 0.334771
Target:  5'- gGCCcugGGGGGCCUCUacacggccgucacGCGgaCCCUC-CUGCg -3'
miRNA:   3'- -UGG---UCCCCGGAGA-------------CGC--GGGAGaGGCG- -5'
29099 3' -64 NC_006146.1 + 77969 0.68 0.463447
Target:  5'- aGCCGGuGGCCUUggaggUGCcgGUCCUCUCUGUc -3'
miRNA:   3'- -UGGUCcCCGGAG-----ACG--CGGGAGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.