miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29099 3' -64 NC_006146.1 + 149575 0.67 0.508411
Target:  5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3'
miRNA:   3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5'
29099 3' -64 NC_006146.1 + 148971 0.67 0.536258
Target:  5'- cGCUAGGGguuuugGCCUCUGCcagcuuccccGCCC-CUCCu- -3'
miRNA:   3'- -UGGUCCC------CGGAGACG----------CGGGaGAGGcg -5'
29099 3' -64 NC_006146.1 + 148968 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 148294 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 148079 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 146497 0.67 0.508411
Target:  5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3'
miRNA:   3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5'
29099 3' -64 NC_006146.1 + 145890 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 145216 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 145001 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 143419 0.67 0.508411
Target:  5'- cGCCGGuuGGGCUguugugcCUGCGCCUUCUCa-- -3'
miRNA:   3'- -UGGUC--CCCGGa------GACGCGGGAGAGgcg -5'
29099 3' -64 NC_006146.1 + 142972 0.7 0.328395
Target:  5'- uGCCAGGGGgCUUCcGCccuaGCCCUUggCCGUg -3'
miRNA:   3'- -UGGUCCCC-GGAGaCG----CGGGAGa-GGCG- -5'
29099 3' -64 NC_006146.1 + 142812 0.72 0.28189
Target:  5'- gGCCGcGGGCCUCUaCuUCCUCUCUGCu -3'
miRNA:   3'- -UGGUcCCCGGAGAcGcGGGAGAGGCG- -5'
29099 3' -64 NC_006146.1 + 142138 0.7 0.335484
Target:  5'- gACUAGGGGCC-CUGgGCCCcgagggcggCUCCc- -3'
miRNA:   3'- -UGGUCCCCGGaGACgCGGGa--------GAGGcg -5'
29099 3' -64 NC_006146.1 + 141923 0.68 0.454703
Target:  5'- gACUGGaGGGCC-CUGgGaggcCCCUgUCCGCg -3'
miRNA:   3'- -UGGUC-CCCGGaGACgC----GGGAgAGGCG- -5'
29099 3' -64 NC_006146.1 + 137601 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137509 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137416 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137323 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137230 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5'
29099 3' -64 NC_006146.1 + 137137 0.76 0.136271
Target:  5'- gGCCGGGGGCCgg-GUGCCCcugggUCCGCu -3'
miRNA:   3'- -UGGUCCCCGGagaCGCGGGag---AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.