miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29104 5' -55.2 NC_006146.1 + 83165 0.66 0.94008
Target:  5'- aGCCACagaggGCCuuGAUuucaaGGUGCAgcAGCUGGg -3'
miRNA:   3'- -CGGUGg----CGGcgUUA-----CCACGU--UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 33260 0.66 0.94008
Target:  5'- gGCCGCUGCCccGCuccgGGUGgGggguggcccGGCUGGg -3'
miRNA:   3'- -CGGUGGCGG--CGuua-CCACgU---------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 59878 0.66 0.94008
Target:  5'- cGCaggaGCaCGCCGCGcgGGccaGCAcGCUGGc -3'
miRNA:   3'- -CGg---UG-GCGGCGUuaCCa--CGUuCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 33136 0.66 0.94008
Target:  5'- gGCCGCUGCCccGCuccgGGUGgGggguggcccGGCUGGg -3'
miRNA:   3'- -CGGUGGCGG--CGuua-CCACgU---------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 55463 0.66 0.94008
Target:  5'- gGCCAcCCGCU-CGAUGGccGCGGGCgAGa -3'
miRNA:   3'- -CGGU-GGCGGcGUUACCa-CGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 66871 0.66 0.930149
Target:  5'- uGCgGCC-CCGaagGUGGUGCu-GCUGGa -3'
miRNA:   3'- -CGgUGGcGGCgu-UACCACGuuCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 55700 0.66 0.930149
Target:  5'- gGCCGCCGCCGgGG-GGcucUGCccgccGCUGGc -3'
miRNA:   3'- -CGGUGGCGGCgUUaCC---ACGuu---CGAUC- -5'
29104 5' -55.2 NC_006146.1 + 72555 0.66 0.929627
Target:  5'- aGCCGCCaaugggcGCCGgcGUGGUGCuggGGCUu- -3'
miRNA:   3'- -CGGUGG-------CGGCguUACCACGu--UCGAuc -5'
29104 5' -55.2 NC_006146.1 + 127437 0.66 0.91925
Target:  5'- gGCCGCCgaggaggcuGCCGCuccagauGUGGcggcccGCAGGCUAc -3'
miRNA:   3'- -CGGUGG---------CGGCGu------UACCa-----CGUUCGAUc -5'
29104 5' -55.2 NC_006146.1 + 130480 0.67 0.913438
Target:  5'- gGCCGCUGCCGCcccgGGUG---GCUAc -3'
miRNA:   3'- -CGGUGGCGGCGuua-CCACguuCGAUc -5'
29104 5' -55.2 NC_006146.1 + 42754 0.67 0.913438
Target:  5'- cGCCugCGgCaGCAGggccgacaGGUGCAGGCg-- -3'
miRNA:   3'- -CGGugGCgG-CGUUa-------CCACGUUCGauc -5'
29104 5' -55.2 NC_006146.1 + 59698 0.67 0.912844
Target:  5'- uGCCGgUGCCGgAGgcggagguguuguUGGUGUAGGCcGGg -3'
miRNA:   3'- -CGGUgGCGGCgUU-------------ACCACGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 66307 0.67 0.907385
Target:  5'- gGCCAUCGUCGgAgacGUGGUaGCAgaagguuuugggAGCUGGc -3'
miRNA:   3'- -CGGUGGCGGCgU---UACCA-CGU------------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 69034 0.67 0.907385
Target:  5'- cGCCACCGuccucgccCCGCcacccGUGGUGCGgcAGCc-- -3'
miRNA:   3'- -CGGUGGC--------GGCGu----UACCACGU--UCGauc -5'
29104 5' -55.2 NC_006146.1 + 148543 0.67 0.894567
Target:  5'- gGCCACUGCCaUGAUgGGUGguGGCcGGu -3'
miRNA:   3'- -CGGUGGCGGcGUUA-CCACguUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 11487 0.67 0.887808
Target:  5'- aGCCACCcggacucggggGCCGuCAugaucGUGGacagcgcggccUGCGAGCUGGc -3'
miRNA:   3'- -CGGUGG-----------CGGC-GU-----UACC-----------ACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 42669 0.67 0.887808
Target:  5'- uGCgGCuCGcCCGCGGUGGgcUGCcugAGGCUGGc -3'
miRNA:   3'- -CGgUG-GC-GGCGUUACC--ACG---UUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 11371 0.67 0.887808
Target:  5'- cGCUGCgCGUCagGCAgGUGG-GCAAGCUGGu -3'
miRNA:   3'- -CGGUG-GCGG--CGU-UACCaCGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 39836 0.67 0.887808
Target:  5'- gGCCuCgGCCGCAcaGUGGgccgGCGggGGCUGu -3'
miRNA:   3'- -CGGuGgCGGCGU--UACCa---CGU--UCGAUc -5'
29104 5' -55.2 NC_006146.1 + 63857 0.68 0.866176
Target:  5'- aGCCACuCGCCaCAcgGGUGCcAGUc-- -3'
miRNA:   3'- -CGGUG-GCGGcGUuaCCACGuUCGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.