miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29104 5' -55.2 NC_006146.1 + 129452 1.1 0.00311
Target:  5'- uGCCACCGCCGCAAUGGUGCAAGCUAGc -3'
miRNA:   3'- -CGGUGGCGGCGUUACCACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 104673 0.77 0.366027
Target:  5'- uGCCugCGCCGCGAUagaGGgGC-AGCUGGg -3'
miRNA:   3'- -CGGugGCGGCGUUA---CCaCGuUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 33001 0.76 0.443685
Target:  5'- uGCCGCCGCUacccccggGgGAUGGUuaaaGCGGGCUAGg -3'
miRNA:   3'- -CGGUGGCGG--------CgUUACCA----CGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 57935 0.74 0.529781
Target:  5'- gGCCGgCGCCGCcAUGGUGCu-GCa-- -3'
miRNA:   3'- -CGGUgGCGGCGuUACCACGuuCGauc -5'
29104 5' -55.2 NC_006146.1 + 4895 0.73 0.590431
Target:  5'- gGCCugCGCCGCc-UGGUGacaGAGCcGGa -3'
miRNA:   3'- -CGGugGCGGCGuuACCACg--UUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 51168 0.73 0.600686
Target:  5'- cGCCGCUGUgGguGUGGaagggggucUGCGGGCUGGc -3'
miRNA:   3'- -CGGUGGCGgCguUACC---------ACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 79815 0.72 0.652161
Target:  5'- uGCCACUGCCGCAGcuggaaGGUGUGAGg--- -3'
miRNA:   3'- -CGGUGGCGGCGUUa-----CCACGUUCgauc -5'
29104 5' -55.2 NC_006146.1 + 45121 0.72 0.652161
Target:  5'- gGCCggugACCGCCGgGAgccuUGGgcuuUGCGGGCUGGg -3'
miRNA:   3'- -CGG----UGGCGGCgUU----ACC----ACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 120675 0.72 0.66244
Target:  5'- aGCCACCGCCaccaucuCGcgGGUGCAcgGGCg-- -3'
miRNA:   3'- -CGGUGGCGGc------GUuaCCACGU--UCGauc -5'
29104 5' -55.2 NC_006146.1 + 115541 0.72 0.672695
Target:  5'- cGUC-CCGCgCGCGGUGGcGgGGGCUGGa -3'
miRNA:   3'- -CGGuGGCG-GCGUUACCaCgUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 154657 0.71 0.693095
Target:  5'- uGCCGCCgGCUGCAccGUGGUGgCGGggggcgcugcuGCUGGg -3'
miRNA:   3'- -CGGUGG-CGGCGU--UACCAC-GUU-----------CGAUC- -5'
29104 5' -55.2 NC_006146.1 + 19738 0.71 0.693095
Target:  5'- cGCUACCGCCGCAucc-UGCugacGCUGGg -3'
miRNA:   3'- -CGGUGGCGGCGUuaccACGuu--CGAUC- -5'
29104 5' -55.2 NC_006146.1 + 170102 0.71 0.693095
Target:  5'- gGCCGgCGCCGCAggGGggGCcGGCgGGg -3'
miRNA:   3'- -CGGUgGCGGCGUuaCCa-CGuUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 55190 0.7 0.752759
Target:  5'- gGCUGCgGCCGCGGcGG-GCGAGCg-- -3'
miRNA:   3'- -CGGUGgCGGCGUUaCCaCGUUCGauc -5'
29104 5' -55.2 NC_006146.1 + 55960 0.7 0.771886
Target:  5'- cGCCAUCGCCGCccaggGGUaGC-GGUUGGu -3'
miRNA:   3'- -CGGUGGCGGCGuua--CCA-CGuUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 53041 0.69 0.799606
Target:  5'- gGCCGCCGCCGagaGGUaaGGgggGCGGGUgGGg -3'
miRNA:   3'- -CGGUGGCGGCg--UUA--CCa--CGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 116493 0.69 0.799606
Target:  5'- uCCACCcccagGCCGCAcaugugggcguUGGUGCAGGCcGGu -3'
miRNA:   3'- cGGUGG-----CGGCGUu----------ACCACGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 47809 0.69 0.799606
Target:  5'- cCCACCGCCGUcucAUGGgcuCGGGCUGc -3'
miRNA:   3'- cGGUGGCGGCGu--UACCac-GUUCGAUc -5'
29104 5' -55.2 NC_006146.1 + 159929 0.69 0.808551
Target:  5'- -gCGCCGCCuGCuuuaGGUGCAcuguggcaGGCUGGg -3'
miRNA:   3'- cgGUGGCGG-CGuua-CCACGU--------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 117749 0.69 0.817333
Target:  5'- gGCCACCGCCGCAGUcccgccacagaGGagGCAAccgucGCg-- -3'
miRNA:   3'- -CGGUGGCGGCGUUA-----------CCa-CGUU-----CGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.