miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29104 5' -55.2 NC_006146.1 + 33001 0.76 0.443685
Target:  5'- uGCCGCCGCUacccccggGgGAUGGUuaaaGCGGGCUAGg -3'
miRNA:   3'- -CGGUGGCGG--------CgUUACCA----CGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 72555 0.66 0.929627
Target:  5'- aGCCGCCaaugggcGCCGgcGUGGUGCuggGGCUu- -3'
miRNA:   3'- -CGGUGG-------CGGCguUACCACGu--UCGAuc -5'
29104 5' -55.2 NC_006146.1 + 55700 0.66 0.930149
Target:  5'- gGCCGCCGCCGgGG-GGcucUGCccgccGCUGGc -3'
miRNA:   3'- -CGGUGGCGGCgUUaCC---ACGuu---CGAUC- -5'
29104 5' -55.2 NC_006146.1 + 44296 0.69 0.825945
Target:  5'- aCCACCGCCaaacCGGUaGUGgGGGCUGGg -3'
miRNA:   3'- cGGUGGCGGc---GUUAcCACgUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 55463 0.66 0.94008
Target:  5'- gGCCAcCCGCU-CGAUGGccGCGGGCgAGa -3'
miRNA:   3'- -CGGU-GGCGGcGUUACCa-CGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 33260 0.66 0.94008
Target:  5'- gGCCGCUGCCccGCuccgGGUGgGggguggcccGGCUGGg -3'
miRNA:   3'- -CGGUGGCGG--CGuua-CCACgU---------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 130480 0.67 0.913438
Target:  5'- gGCCGCUGCCGCcccgGGUG---GCUAc -3'
miRNA:   3'- -CGGUGGCGGCGuua-CCACguuCGAUc -5'
29104 5' -55.2 NC_006146.1 + 33136 0.66 0.94008
Target:  5'- gGCCGCUGCCccGCuccgGGUGgGggguggcccGGCUGGg -3'
miRNA:   3'- -CGGUGGCGG--CGuua-CCACgU---------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 129452 1.1 0.00311
Target:  5'- uGCCACCGCCGCAAUGGUGCAAGCUAGc -3'
miRNA:   3'- -CGGUGGCGGCGUUACCACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 59878 0.66 0.94008
Target:  5'- cGCaggaGCaCGCCGCGcgGGccaGCAcGCUGGc -3'
miRNA:   3'- -CGg---UG-GCGGCGUuaCCa--CGUuCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 127437 0.66 0.91925
Target:  5'- gGCCGCCgaggaggcuGCCGCuccagauGUGGcggcccGCAGGCUAc -3'
miRNA:   3'- -CGGUGG---------CGGCGu------UACCa-----CGUUCGAUc -5'
29104 5' -55.2 NC_006146.1 + 104673 0.77 0.366027
Target:  5'- uGCCugCGCCGCGAUagaGGgGC-AGCUGGg -3'
miRNA:   3'- -CGGugGCGGCGUUA---CCaCGuUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 59698 0.67 0.912844
Target:  5'- uGCCGgUGCCGgAGgcggagguguuguUGGUGUAGGCcGGg -3'
miRNA:   3'- -CGGUgGCGGCgUU-------------ACCACGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 39836 0.67 0.887808
Target:  5'- gGCCuCgGCCGCAcaGUGGgccgGCGggGGCUGu -3'
miRNA:   3'- -CGGuGgCGGCGU--UACCa---CGU--UCGAUc -5'
29104 5' -55.2 NC_006146.1 + 19738 0.71 0.693095
Target:  5'- cGCUACCGCCGCAucc-UGCugacGCUGGg -3'
miRNA:   3'- -CGGUGGCGGCGUuaccACGuu--CGAUC- -5'
29104 5' -55.2 NC_006146.1 + 11371 0.67 0.887808
Target:  5'- cGCUGCgCGUCagGCAgGUGG-GCAAGCUGGu -3'
miRNA:   3'- -CGGUG-GCGG--CGU-UACCaCGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 79815 0.72 0.652161
Target:  5'- uGCCACUGCCGCAGcuggaaGGUGUGAGg--- -3'
miRNA:   3'- -CGGUGGCGGCGUUa-----CCACGUUCgauc -5'
29104 5' -55.2 NC_006146.1 + 115541 0.72 0.672695
Target:  5'- cGUC-CCGCgCGCGGUGGcGgGGGCUGGa -3'
miRNA:   3'- -CGGuGGCG-GCGUUACCaCgUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 117749 0.69 0.817333
Target:  5'- gGCCACCGCCGCAGUcccgccacagaGGagGCAAccgucGCg-- -3'
miRNA:   3'- -CGGUGGCGGCGUUA-----------CCa-CGUU-----CGauc -5'
29104 5' -55.2 NC_006146.1 + 159929 0.69 0.808551
Target:  5'- -gCGCCGCCuGCuuuaGGUGCAcuguggcaGGCUGGg -3'
miRNA:   3'- cgGUGGCGG-CGuua-CCACGU--------UCGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.