Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29104 | 5' | -55.2 | NC_006146.1 | + | 83165 | 0.66 | 0.94008 |
Target: 5'- aGCCACagaggGCCuuGAUuucaaGGUGCAgcAGCUGGg -3' miRNA: 3'- -CGGUGg----CGGcgUUA-----CCACGU--UCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 104673 | 0.77 | 0.366027 |
Target: 5'- uGCCugCGCCGCGAUagaGGgGC-AGCUGGg -3' miRNA: 3'- -CGGugGCGGCGUUA---CCaCGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 57935 | 0.74 | 0.529781 |
Target: 5'- gGCCGgCGCCGCcAUGGUGCu-GCa-- -3' miRNA: 3'- -CGGUgGCGGCGuUACCACGuuCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 51168 | 0.73 | 0.600686 |
Target: 5'- cGCCGCUGUgGguGUGGaagggggucUGCGGGCUGGc -3' miRNA: 3'- -CGGUGGCGgCguUACC---------ACGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 79815 | 0.72 | 0.652161 |
Target: 5'- uGCCACUGCCGCAGcuggaaGGUGUGAGg--- -3' miRNA: 3'- -CGGUGGCGGCGUUa-----CCACGUUCgauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 115541 | 0.72 | 0.672695 |
Target: 5'- cGUC-CCGCgCGCGGUGGcGgGGGCUGGa -3' miRNA: 3'- -CGGuGGCG-GCGUUACCaCgUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 19738 | 0.71 | 0.693095 |
Target: 5'- cGCUACCGCCGCAucc-UGCugacGCUGGg -3' miRNA: 3'- -CGGUGGCGGCGUuaccACGuu--CGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 159929 | 0.69 | 0.808551 |
Target: 5'- -gCGCCGCCuGCuuuaGGUGCAcuguggcaGGCUGGg -3' miRNA: 3'- cgGUGGCGG-CGuua-CCACGU--------UCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 117749 | 0.69 | 0.817333 |
Target: 5'- gGCCACCGCCGCAGUcccgccacagaGGagGCAAccgucGCg-- -3' miRNA: 3'- -CGGUGGCGGCGUUA-----------CCa-CGUU-----CGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42634 | 0.69 | 0.825945 |
Target: 5'- gGCCGCCGCCGUgggccucacguAGUGG-GCccaGAGgUAGc -3' miRNA: 3'- -CGGUGGCGGCG-----------UUACCaCG---UUCgAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 168092 | 0.68 | 0.858531 |
Target: 5'- cGCCACCGCCuuGGucUGGaagGCcuGCUGGc -3' miRNA: 3'- -CGGUGGCGGcgUU--ACCa--CGuuCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 66871 | 0.66 | 0.930149 |
Target: 5'- uGCgGCC-CCGaagGUGGUGCu-GCUGGa -3' miRNA: 3'- -CGgUGGcGGCgu-UACCACGuuCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 127437 | 0.66 | 0.91925 |
Target: 5'- gGCCGCCgaggaggcuGCCGCuccagauGUGGcggcccGCAGGCUAc -3' miRNA: 3'- -CGGUGG---------CGGCGu------UACCa-----CGUUCGAUc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42754 | 0.67 | 0.913438 |
Target: 5'- cGCCugCGgCaGCAGggccgacaGGUGCAGGCg-- -3' miRNA: 3'- -CGGugGCgG-CGUUa-------CCACGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 59698 | 0.67 | 0.912844 |
Target: 5'- uGCCGgUGCCGgAGgcggagguguuguUGGUGUAGGCcGGg -3' miRNA: 3'- -CGGUgGCGGCgUU-------------ACCACGUUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 39836 | 0.67 | 0.887808 |
Target: 5'- gGCCuCgGCCGCAcaGUGGgccgGCGggGGCUGu -3' miRNA: 3'- -CGGuGgCGGCGU--UACCa---CGU--UCGAUc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 11371 | 0.67 | 0.887808 |
Target: 5'- cGCUGCgCGUCagGCAgGUGG-GCAAGCUGGu -3' miRNA: 3'- -CGGUG-GCGG--CGU-UACCaCGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 11487 | 0.67 | 0.887808 |
Target: 5'- aGCCACCcggacucggggGCCGuCAugaucGUGGacagcgcggccUGCGAGCUGGc -3' miRNA: 3'- -CGGUGG-----------CGGC-GU-----UACC-----------ACGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 33260 | 0.66 | 0.94008 |
Target: 5'- gGCCGCUGCCccGCuccgGGUGgGggguggcccGGCUGGg -3' miRNA: 3'- -CGGUGGCGG--CGuua-CCACgU---------UCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 33001 | 0.76 | 0.443685 |
Target: 5'- uGCCGCCGCUacccccggGgGAUGGUuaaaGCGGGCUAGg -3' miRNA: 3'- -CGGUGGCGG--------CgUUACCA----CGUUCGAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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