miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 3' -51.3 NC_006146.1 + 21366 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 24444 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 15210 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 18288 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 27522 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 14845 0.66 0.99453
Target:  5'- gCCCGggGCcgCgGGAGGcCGAGgGGGCAGc -3'
miRNA:   3'- -GGGC--UGuaGgUUUCCuGCUU-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 98907 0.66 0.99453
Target:  5'- aCCCG-CGccagggucuccUCCAAAGGauggGCGGAGGuCGGc -3'
miRNA:   3'- -GGGCuGU-----------AGGUUUCC----UGCUUCCuGUC- -5'
29106 3' -51.3 NC_006146.1 + 42254 0.66 0.99453
Target:  5'- cCCCGcCGUCCccgaaugcgggaGGAGGAUGGguGGuGGCGGg -3'
miRNA:   3'- -GGGCuGUAGG------------UUUCCUGCU--UC-CUGUC- -5'
29106 3' -51.3 NC_006146.1 + 158463 0.66 0.99445
Target:  5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3'
miRNA:   3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 155384 0.66 0.99445
Target:  5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3'
miRNA:   3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 152306 0.66 0.99445
Target:  5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3'
miRNA:   3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 155483 0.66 0.99445
Target:  5'- gCCUGAgG-CCcAGGGGCGAGGGgacugagGCGGg -3'
miRNA:   3'- -GGGCUgUaGGuUUCCUGCUUCC-------UGUC- -5'
29106 3' -51.3 NC_006146.1 + 146150 0.66 0.99445
Target:  5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3'
miRNA:   3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 143072 0.66 0.99445
Target:  5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3'
miRNA:   3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 125872 0.66 0.99445
Target:  5'- cCCCGGCcUCUcucccucacucucGAGGGACGGuGGGGCc- -3'
miRNA:   3'- -GGGCUGuAGG-------------UUUCCUGCU-UCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 158562 0.66 0.99445
Target:  5'- gCCUGAgG-CCcAGGGGCGAGGGgacugagGCGGg -3'
miRNA:   3'- -GGGCUgUaGGuUUCCUGCUUCC-------UGUC- -5'
29106 3' -51.3 NC_006146.1 + 152405 0.66 0.99445
Target:  5'- gCCUGAgG-CCcAGGGGCGAGGGgacugagGCGGg -3'
miRNA:   3'- -GGGCUgUaGGuUUCCUGCUUCC-------UGUC- -5'
29106 3' -51.3 NC_006146.1 + 149327 0.66 0.99445
Target:  5'- gCCUGAgG-CCcAGGGGCGAGGGgacugagGCGGg -3'
miRNA:   3'- -GGGCUgUaGGuUUCCUGCUUCC-------UGUC- -5'
29106 3' -51.3 NC_006146.1 + 146249 0.66 0.99445
Target:  5'- gCCUGAgG-CCcAGGGGCGAGGGgacugagGCGGg -3'
miRNA:   3'- -GGGCUgUaGGuUUCCUGCUUCC-------UGUC- -5'
29106 3' -51.3 NC_006146.1 + 149228 0.66 0.99445
Target:  5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3'
miRNA:   3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.