miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 3' -51.3 NC_006146.1 + 22624 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 22940 0.7 0.956627
Target:  5'- -aCGAcCAUCC-AGGGAUGAAGGcCGGc -3'
miRNA:   3'- ggGCU-GUAGGuUUCCUGCUUCCuGUC- -5'
29106 3' -51.3 NC_006146.1 + 24444 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 24985 0.68 0.984364
Target:  5'- gCUCGuuuCuguUCUuuGGGGCGGAGGACAa -3'
miRNA:   3'- -GGGCu--Gu--AGGuuUCCUGCUUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 25702 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 26300 0.73 0.869939
Target:  5'- gCCGGCAUCUGgaggcguggaaaucAAGGugGAgaagGGGGCAGu -3'
miRNA:   3'- gGGCUGUAGGU--------------UUCCugCU----UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 27355 0.73 0.872169
Target:  5'- gCgCGGCAaggCCGGGGGGCGucuGGACAGc -3'
miRNA:   3'- -GgGCUGUa--GGUUUCCUGCuu-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 27522 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 28780 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 33005 0.67 0.990475
Target:  5'- cCCCGGCccuGUCCAcGGGGacccccugcCGGcccGGGGCGGg -3'
miRNA:   3'- -GGGCUG---UAGGUuUCCU---------GCU---UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 33203 0.69 0.975653
Target:  5'- cCCCGGgGggaggCCGGAGGGgGAgccGGGAUGGg -3'
miRNA:   3'- -GGGCUgUa----GGUUUCCUgCU---UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 34069 0.72 0.893363
Target:  5'- uCCCGugGcacggggCCGGGGGuccCGggGGGCAGc -3'
miRNA:   3'- -GGGCugUa------GGUUUCCu--GCuuCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 38960 0.66 0.996759
Target:  5'- cCuuGGCAUCCGGGuGGGCccccagacucucgcaGAGgGGGCAGa -3'
miRNA:   3'- -GggCUGUAGGUUU-CCUG---------------CUU-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 39184 0.66 0.993679
Target:  5'- cUCCGGgGUCCAcuGcaauuacacGGCGGAGGACGa -3'
miRNA:   3'- -GGGCUgUAGGUuuC---------CUGCUUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 40306 0.67 0.989161
Target:  5'- gCCgGGCAggCCAAaguAGGcCGGAGGAgGGu -3'
miRNA:   3'- -GGgCUGUa-GGUU---UCCuGCUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 41020 0.66 0.995142
Target:  5'- gCCgGGCGUCagagccgugggaGGAGGGCcuAGGACAGc -3'
miRNA:   3'- -GGgCUGUAGg-----------UUUCCUGcuUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 42254 0.66 0.99453
Target:  5'- cCCCGcCGUCCccgaaugcgggaGGAGGAUGGguGGuGGCGGg -3'
miRNA:   3'- -GGGCuGUAGG------------UUUCCUGCU--UC-CUGUC- -5'
29106 3' -51.3 NC_006146.1 + 42368 0.75 0.778919
Target:  5'- uCCCGcGCcgCCAGgguGGGCGAGGGGCGc -3'
miRNA:   3'- -GGGC-UGuaGGUUu--CCUGCUUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 43441 0.76 0.700271
Target:  5'- gCCGACAUgguucuguaCCAGGGucCGAAGGACGGg -3'
miRNA:   3'- gGGCUGUA---------GGUUUCcuGCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 44116 0.8 0.516104
Target:  5'- cCCCGGCugcCCGgcGAGGAgGggGGGCAGg -3'
miRNA:   3'- -GGGCUGua-GGU--UUCCUgCuuCCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.