miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 3' -51.3 NC_006146.1 + 864 0.77 0.669549
Target:  5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3'
miRNA:   3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 1796 0.77 0.669549
Target:  5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3'
miRNA:   3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 2728 0.77 0.669549
Target:  5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3'
miRNA:   3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 3660 0.77 0.669549
Target:  5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3'
miRNA:   3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 4660 0.73 0.870684
Target:  5'- cCCCGcCGUCCugggccggguGGGCGAggcgGGGGCAGa -3'
miRNA:   3'- -GGGCuGUAGGuuu-------CCUGCU----UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 5630 0.68 0.984364
Target:  5'- aCCaggGACAUggCCAu--GGCGggGGACAGg -3'
miRNA:   3'- -GGg--CUGUA--GGUuucCUGCuuCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 6043 0.71 0.918335
Target:  5'- aCCCGA--UCCAAGcaacugacgguGGuaACGGAGGACAGg -3'
miRNA:   3'- -GGGCUguAGGUUU-----------CC--UGCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 12726 0.66 0.995955
Target:  5'- uCCUGACggCCAAGGaGGCcAAGGugGu -3'
miRNA:   3'- -GGGCUGuaGGUUUC-CUGcUUCCugUc -5'
29106 3' -51.3 NC_006146.1 + 13390 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 14007 0.67 0.99166
Target:  5'- gCCgGGCuggugCUGGAaGGCGGAGGGCAGg -3'
miRNA:   3'- -GGgCUGua---GGUUUcCUGCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 14193 0.68 0.984364
Target:  5'- cCCCGGag-CCu--GGACGggGaGGCGGu -3'
miRNA:   3'- -GGGCUguaGGuuuCCUGCuuC-CUGUC- -5'
29106 3' -51.3 NC_006146.1 + 14845 0.66 0.99453
Target:  5'- gCCCGggGCcgCgGGAGGcCGAGgGGGCAGc -3'
miRNA:   3'- -GGGC--UGuaGgUUUCCuGCUU-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 15210 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 15829 0.67 0.989161
Target:  5'- gCCCGGCAUCgAGccGAgCGAuuGGAUAGa -3'
miRNA:   3'- -GGGCUGUAGgUUucCU-GCUu-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 16468 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 18288 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 19546 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 20124 0.69 0.975653
Target:  5'- gCCCGGCA-CCugcuGGGGGCcaaaaaGGAGGACGu -3'
miRNA:   3'- -GGGCUGUaGGu---UUCCUG------CUUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 21366 0.66 0.994844
Target:  5'- aCCCacacGCGUCCGcAGGAgGGucuuccuugaagaagAGGACGGg -3'
miRNA:   3'- -GGGc---UGUAGGUuUCCUgCU---------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 21383 0.67 0.99166
Target:  5'- aUCGACAUCCucaacGAGGccuauGCGGaccucagagAGGGCAGg -3'
miRNA:   3'- gGGCUGUAGGu----UUCC-----UGCU---------UCCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.