miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 3' -51.3 NC_006146.1 + 170474 0.68 0.982451
Target:  5'- cCCgCGAC--CCGAGGGGCGAgcggGGGGCu- -3'
miRNA:   3'- -GG-GCUGuaGGUUUCCUGCU----UCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 170441 0.71 0.923972
Target:  5'- gCCCGGCGcgugCCGGGGGACccGGGGGCGu -3'
miRNA:   3'- -GGGCUGUa---GGUUUCCUGc-UUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 170402 0.68 0.986115
Target:  5'- cCCUGGgGgCCucGGGGGCGGAGGGgGGg -3'
miRNA:   3'- -GGGCUgUaGGu-UUCCUGCUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 170208 0.71 0.918334
Target:  5'- gCCUGGCGggggCCAGcgcggggucccGGGGCGggGGGuCGGg -3'
miRNA:   3'- -GGGCUGUa---GGUU-----------UCCUGCuuCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 169993 0.69 0.975653
Target:  5'- gCCCGGgGUcCCGGGGGGCGgcGcGCGGc -3'
miRNA:   3'- -GGGCUgUA-GGUUUCCUGCuuCcUGUC- -5'
29106 3' -51.3 NC_006146.1 + 169543 0.68 0.982451
Target:  5'- cCCgCGAC--CCGAGGGGCGAgcggGGGGCu- -3'
miRNA:   3'- -GG-GCUGuaGGUUUCCUGCU----UCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 169510 0.71 0.923972
Target:  5'- gCCCGGCGcgugCCGGGGGACccGGGGGCGu -3'
miRNA:   3'- -GGGCUGUa---GGUUUCCUGc-UUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 169471 0.68 0.986115
Target:  5'- cCCUGGgGgCCucGGGGGCGGAGGGgGGg -3'
miRNA:   3'- -GGGCUgUaGGu-UUCCUGCUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 169277 0.71 0.918334
Target:  5'- gCCUGGCGggggCCAGcgcggggucccGGGGCGggGGGuCGGg -3'
miRNA:   3'- -GGGCUGUa---GGUU-----------UCCUGCuuCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 169061 0.69 0.975653
Target:  5'- gCCCGGgGUcCCGGGGGGCGgcGcGCGGc -3'
miRNA:   3'- -GGGCUgUA-GGUUUCCUGCuuCcUGUC- -5'
29106 3' -51.3 NC_006146.1 + 168611 0.68 0.982451
Target:  5'- cCCgCGAC--CCGAGGGGCGAgcggGGGGCu- -3'
miRNA:   3'- -GG-GCUGuaGGUUUCCUGCU----UCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 168578 0.71 0.923972
Target:  5'- gCCCGGCGcgugCCGGGGGACccGGGGGCGu -3'
miRNA:   3'- -GGGCUGUa---GGUUUCCUGc-UUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 168539 0.68 0.986115
Target:  5'- cCCUGGgGgCCucGGGGGCGGAGGGgGGg -3'
miRNA:   3'- -GGGCUgUaGGu-UUCCUGCUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 168345 0.71 0.918334
Target:  5'- gCCUGGCGggggCCAGcgcggggucccGGGGCGggGGGuCGGg -3'
miRNA:   3'- -GGGCUGUa---GGUU-----------UCCUGCuuCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 168136 0.76 0.720475
Target:  5'- cCCUGACAUCCGGgcuuGGGccuGCGAGGGcCGGg -3'
miRNA:   3'- -GGGCUGUAGGUU----UCC---UGCUUCCuGUC- -5'
29106 3' -51.3 NC_006146.1 + 168129 0.69 0.975653
Target:  5'- gCCCGGgGUcCCGGGGGGCGgcGcGCGGc -3'
miRNA:   3'- -GGGCUgUA-GGUUUCCUGCuuCcUGUC- -5'
29106 3' -51.3 NC_006146.1 + 167678 0.68 0.982451
Target:  5'- cCCgCGAC--CCGAGGGGCGAgcggGGGGCu- -3'
miRNA:   3'- -GG-GCUGuaGGUUUCCUGCU----UCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 167646 0.66 0.993679
Target:  5'- gCCCGGCGcgugCCGGGGGcCcGGGGGCGu -3'
miRNA:   3'- -GGGCUGUa---GGUUUCCuGcUUCCUGUc -5'
29106 3' -51.3 NC_006146.1 + 167607 0.68 0.986115
Target:  5'- cCCUGGgGgCCucGGGGGCGGAGGGgGGg -3'
miRNA:   3'- -GGGCUgUaGGu-UUCCUGCUUCCUgUC- -5'
29106 3' -51.3 NC_006146.1 + 167413 0.71 0.918334
Target:  5'- gCCUGGCGggggCCAGcgcggggucccGGGGCGggGGGuCGGg -3'
miRNA:   3'- -GGGCUGUa---GGUU-----------UCCUGCuuCCU-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.