Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 130204 | 1.11 | 0.008458 |
Target: 5'- cCCCGACAUCCAAAGGACGAAGGACAGc -3' miRNA: 3'- -GGGCUGUAGGUUUCCUGCUUCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 44507 | 0.81 | 0.457379 |
Target: 5'- cCCCgGGCGUCCGGGguuucaggcugacGGGCGGAGGACGGu -3' miRNA: 3'- -GGG-CUGUAGGUUU-------------CCUGCUUCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 122601 | 0.8 | 0.486803 |
Target: 5'- cUCCGACGgu-GGAGGGCGAGGGGCGGa -3' miRNA: 3'- -GGGCUGUaggUUUCCUGCUUCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 44116 | 0.8 | 0.516104 |
Target: 5'- cCCCGGCugcCCGgcGAGGAgGggGGGCAGg -3' miRNA: 3'- -GGGCUGua-GGU--UUCCUgCuuCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 22624 | 0.78 | 0.59717 |
Target: 5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3' miRNA: 3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 28780 | 0.78 | 0.59717 |
Target: 5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3' miRNA: 3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 19546 | 0.78 | 0.59717 |
Target: 5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3' miRNA: 3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 13390 | 0.78 | 0.59717 |
Target: 5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3' miRNA: 3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 25702 | 0.78 | 0.59717 |
Target: 5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3' miRNA: 3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 16468 | 0.78 | 0.59717 |
Target: 5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3' miRNA: 3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 1796 | 0.77 | 0.669549 |
Target: 5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3' miRNA: 3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 3660 | 0.77 | 0.669549 |
Target: 5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3' miRNA: 3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 864 | 0.77 | 0.669549 |
Target: 5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3' miRNA: 3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 2728 | 0.77 | 0.669549 |
Target: 5'- cCCCGACAUCC-AGGGACuGGccgcGGGAgCAGa -3' miRNA: 3'- -GGGCUGUAGGuUUCCUG-CU----UCCU-GUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 43441 | 0.76 | 0.700271 |
Target: 5'- gCCGACAUgguucuguaCCAGGGucCGAAGGACGGg -3' miRNA: 3'- gGGCUGUA---------GGUUUCcuGCUUCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 151202 | 0.76 | 0.710407 |
Target: 5'- cCCCGugGaCCAGAGGACGcAGGagauuuGCAGg -3' miRNA: 3'- -GGGCugUaGGUUUCCUGCuUCC------UGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 168136 | 0.76 | 0.720475 |
Target: 5'- cCCUGACAUCCGGgcuuGGGccuGCGAGGGcCGGg -3' miRNA: 3'- -GGGCUGUAGGUU----UCC---UGCUUCCuGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 113692 | 0.76 | 0.730465 |
Target: 5'- gCCCGGCcUCCGgcccGGGGACGGcggcggcagccGGGACGGu -3' miRNA: 3'- -GGGCUGuAGGU----UUCCUGCU-----------UCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 90287 | 0.75 | 0.750175 |
Target: 5'- gCCGugGUC--GAGGACGAggaaGGGGCAGa -3' miRNA: 3'- gGGCugUAGguUUCCUGCU----UCCUGUC- -5' |
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29106 | 3' | -51.3 | NC_006146.1 | + | 149115 | 0.75 | 0.769459 |
Target: 5'- gCCCGGCAUCCcgcugggcuuaGAAuGGugGgcGGGCGGu -3' miRNA: 3'- -GGGCUGUAGG-----------UUU-CCugCuuCCUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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