miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 3' -51.3 NC_006146.1 + 130204 1.11 0.008458
Target:  5'- cCCCGACAUCCAAAGGACGAAGGACAGc -3'
miRNA:   3'- -GGGCUGUAGGUUUCCUGCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 34069 0.72 0.893363
Target:  5'- uCCCGugGcacggggCCGGGGGuccCGggGGGCAGc -3'
miRNA:   3'- -GGGCugUa------GGUUUCCu--GCuuCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 167413 0.71 0.918334
Target:  5'- gCCUGGCGggggCCAGcgcggggucccGGGGCGggGGGuCGGg -3'
miRNA:   3'- -GGGCUGUa---GGUU-----------UCCUGCuuCCU-GUC- -5'
29106 3' -51.3 NC_006146.1 + 38960 0.66 0.996759
Target:  5'- cCuuGGCAUCCGGGuGGGCccccagacucucgcaGAGgGGGCAGa -3'
miRNA:   3'- -GggCUGUAGGUUU-CCUG---------------CUU-CCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 19546 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 22624 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 28780 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 151202 0.76 0.710407
Target:  5'- cCCCGugGaCCAGAGGACGcAGGagauuuGCAGg -3'
miRNA:   3'- -GGGCugUaGGUUUCCUGCuUCC------UGUC- -5'
29106 3' -51.3 NC_006146.1 + 149115 0.75 0.769459
Target:  5'- gCCCGGCAUCCcgcugggcuuaGAAuGGugGgcGGGCGGu -3'
miRNA:   3'- -GGGCUGUAGG-----------UUU-CCugCuuCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 48202 0.72 0.893363
Target:  5'- aCuuGGCAUCC-GGGGACuGGAGGGCc- -3'
miRNA:   3'- -GggCUGUAGGuUUCCUG-CUUCCUGuc -5'
29106 3' -51.3 NC_006146.1 + 139036 0.73 0.869938
Target:  5'- aCCG-CAUCCcAGGGGCGGaagcguggacccagAGGGCGGa -3'
miRNA:   3'- gGGCuGUAGGuUUCCUGCU--------------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 90287 0.75 0.750175
Target:  5'- gCCGugGUC--GAGGACGAggaaGGGGCAGa -3'
miRNA:   3'- gGGCugUAGguUUCCUGCU----UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 44507 0.81 0.457379
Target:  5'- cCCCgGGCGUCCGGGguuucaggcugacGGGCGGAGGACGGu -3'
miRNA:   3'- -GGG-CUGUAGGUUU-------------CCUGCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 4660 0.73 0.870684
Target:  5'- cCCCGcCGUCCugggccggguGGGCGAggcgGGGGCAGa -3'
miRNA:   3'- -GGGCuGUAGGuuu-------CCUGCU----UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 13390 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 113692 0.76 0.730465
Target:  5'- gCCCGGCcUCCGgcccGGGGACGGcggcggcagccGGGACGGu -3'
miRNA:   3'- -GGGCUGuAGGU----UUCCUGCU-----------UCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 160775 0.72 0.879461
Target:  5'- cUuuGuCGUCC-GGGGGCGAGGGugAGa -3'
miRNA:   3'- -GggCuGUAGGuUUCCUGCUUCCugUC- -5'
29106 3' -51.3 NC_006146.1 + 127942 0.71 0.912453
Target:  5'- cUCCGcgcucaGCGUgCccGGGGCGGAGGGCAGg -3'
miRNA:   3'- -GGGC------UGUAgGuuUCCUGCUUCCUGUC- -5'
29106 3' -51.3 NC_006146.1 + 16468 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5'
29106 3' -51.3 NC_006146.1 + 25702 0.78 0.59717
Target:  5'- gCCCcuaGUCCAGAGGACGGAGGAgCAc -3'
miRNA:   3'- -GGGcugUAGGUUUCCUGCUUCCU-GUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.