Results 1 - 20 of 190 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 38960 | 0.66 | 0.996759 |
Target: 5'- cCuuGGCAUCCGGGuGGGCccccagacucucgcaGAGgGGGCAGa -3' miRNA: 3'- -GggCUGUAGGUUU-CCUG---------------CUU-CCUGUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 158463 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3' miRNA: 3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 155384 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3' miRNA: 3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 152306 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3' miRNA: 3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 149228 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3' miRNA: 3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 146150 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3' miRNA: 3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 143072 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCgccuggcucauguGUCCAGaccGGGACucugggacuguaGAGGGAgAGg -3' miRNA: 3'- -GGGCUG-------------UAGGUU---UCCUG------------CUUCCUgUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 125872 | 0.66 | 0.99445 |
Target: 5'- cCCCGGCcUCUcucccucacucucGAGGGACGGuGGGGCc- -3' miRNA: 3'- -GGGCUGuAGG-------------UUUCCUGCU-UCCUGuc -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 158562 | 0.66 | 0.99445 |
Target: 5'- gCCUGAgG-CCcAGGGGCGAGGGgacugagGCGGg -3' miRNA: 3'- -GGGCUgUaGGuUUCCUGCUUCC-------UGUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 14845 | 0.66 | 0.99453 |
Target: 5'- gCCCGggGCcgCgGGAGGcCGAGgGGGCAGc -3' miRNA: 3'- -GGGC--UGuaGgUUUCCuGCUU-CCUGUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 139705 | 0.66 | 0.995286 |
Target: 5'- --aGGCAUCCAu-GGuguCGAGGGugGGc -3' miRNA: 3'- gggCUGUAGGUuuCCu--GCUUCCugUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 57913 | 0.66 | 0.995286 |
Target: 5'- uCCagGACAUgCAGAGGGCGcuGGcCGGc -3' miRNA: 3'- -GGg-CUGUAgGUUUCCUGCuuCCuGUC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 158429 | 0.66 | 0.995955 |
Target: 5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3' miRNA: 3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 155350 | 0.66 | 0.995955 |
Target: 5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3' miRNA: 3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 152272 | 0.66 | 0.995955 |
Target: 5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3' miRNA: 3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 149194 | 0.66 | 0.995955 |
Target: 5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3' miRNA: 3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 146116 | 0.66 | 0.995955 |
Target: 5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3' miRNA: 3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 143038 | 0.66 | 0.995955 |
Target: 5'- gCCGGaGUCCAGAGGGgccCGAGGGcCuGa -3' miRNA: 3'- gGGCUgUAGGUUUCCU---GCUUCCuGuC- -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 12726 | 0.66 | 0.995955 |
Target: 5'- uCCUGACggCCAAGGaGGCcAAGGugGu -3' miRNA: 3'- -GGGCUGuaGGUUUC-CUGcUUCCugUc -5' |
|||||||
29106 | 3' | -51.3 | NC_006146.1 | + | 112561 | 0.66 | 0.995286 |
Target: 5'- aCCCGGgGUCguGAGGAUGcagcuGGcCAGg -3' miRNA: 3'- -GGGCUgUAGguUUCCUGCuu---CCuGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home